miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 123510 0.68 0.917674
Target:  5'- -gGCCGGGgccagggcuGCCGCGGGCUc------- -3'
miRNA:   3'- agCGGCCC---------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 122836 0.66 0.97615
Target:  5'- gCGCCcaccGGGcCCGCGcccuGGCUUgugGUGCu -3'
miRNA:   3'- aGCGG----CCCuGGCGC----UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 122648 0.66 0.970608
Target:  5'- gCGCCGGcugcGGCCucCGGGCUUUAcgucuuUGUGCu -3'
miRNA:   3'- aGCGGCC----CUGGc-GCUCGAAAU------AUAUG- -5'
6354 3' -52.4 NC_001847.1 + 122389 0.68 0.923462
Target:  5'- -gGCCGGcGACUGCGcGCUcauccgcAUAUACg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGAaa-----UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 122214 0.66 0.971784
Target:  5'- -aGCCGGGGCCGgGuGCccucagggGCg -3'
miRNA:   3'- agCGGCCCUGGCgCuCGaaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 121497 0.67 0.944062
Target:  5'- gCGCCGGaGAaccagCGCGAGCUUcgc-UGCg -3'
miRNA:   3'- aGCGGCC-CUg----GCGCUCGAAauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 120358 0.69 0.911631
Target:  5'- gCGCuacaaCGGGACCGuCGAGCUgc---UGCg -3'
miRNA:   3'- aGCG-----GCCCUGGC-GCUCGAaauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 118899 0.66 0.978615
Target:  5'- -gGCCGGGGCCG-GGGCc-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 118813 0.66 0.973484
Target:  5'- cUCGCCGuuGCgGUGAGCUUgcc-UACa -3'
miRNA:   3'- -AGCGGCccUGgCGCUCGAAauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 118690 0.68 0.923462
Target:  5'- -gGCCGGG-CCGCagccccGGCUggGUAUAUa -3'
miRNA:   3'- agCGGCCCuGGCGc-----UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 117472 0.66 0.97615
Target:  5'- gUGCCcggcGGACCGCGAGCcgccg--ACg -3'
miRNA:   3'- aGCGGc---CCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 116160 0.72 0.783671
Target:  5'- gCGCUGGcGGCCGCGGGCg-------- -3'
miRNA:   3'- aGCGGCC-CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 113963 0.67 0.960284
Target:  5'- cCGCCGGGcgcgucGCCGCagaagcgcuccagGAGC---GUAUACa -3'
miRNA:   3'- aGCGGCCC------UGGCG-------------CUCGaaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 111327 0.68 0.923462
Target:  5'- gCGCU-GGACCGCGAGCa-------- -3'
miRNA:   3'- aGCGGcCCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 111281 0.68 0.939294
Target:  5'- gCGCCGGG-CCGgGGGCg-------- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 111215 0.7 0.877675
Target:  5'- cUGCCGGGAuaGCGGGagggcAUAUGCa -3'
miRNA:   3'- aGCGGCCCUggCGCUCgaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 110200 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 108781 0.69 0.891992
Target:  5'- gCGCCGGGcggcccacCCGggaGAGCUgcAUGUACg -3'
miRNA:   3'- aGCGGCCCu-------GGCg--CUCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 108657 0.68 0.934272
Target:  5'- -gGCCGGGGCCGCggacGAGUUUc------ -3'
miRNA:   3'- agCGGCCCUGGCG----CUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 108085 0.69 0.905334
Target:  5'- cCGCCcggGGGGCUGCGGGCcucucUUGUAUc- -3'
miRNA:   3'- aGCGG---CCCUGGCGCUCGa----AAUAUAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.