miRNA display CGI


Results 41 - 60 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 111215 0.7 0.877675
Target:  5'- cUGCCGGGAuaGCGGGagggcAUAUGCa -3'
miRNA:   3'- aGCGGCCCUggCGCUCgaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 2784 0.69 0.884953
Target:  5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 105597 0.69 0.884953
Target:  5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 101504 0.69 0.884953
Target:  5'- gCGCCGGcugcACCGCGGGUgUUUGUcgACc -3'
miRNA:   3'- aGCGGCCc---UGGCGCUCG-AAAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 37275 0.69 0.884953
Target:  5'- -gGCCGGGGCgGCgucgacugGAGCaUUGUAUAa -3'
miRNA:   3'- agCGGCCCUGgCG--------CUCGaAAUAUAUg -5'
6354 3' -52.4 NC_001847.1 + 62891 0.69 0.891992
Target:  5'- uUCGUCGGGugCaGCGGGUggcgcggGUGCu -3'
miRNA:   3'- -AGCGGCCCugG-CGCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 108781 0.69 0.891992
Target:  5'- gCGCCGGGcggcccacCCGggaGAGCUgcAUGUACg -3'
miRNA:   3'- aGCGGCCCu-------GGCg--CUCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 129523 0.69 0.891992
Target:  5'- gCGCgCGGGACCGCG-GCg-------- -3'
miRNA:   3'- aGCG-GCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 3808 0.69 0.891992
Target:  5'- gUGCCGGcacggggcgucGGCCGCGAGCguggcgUUGUucGCg -3'
miRNA:   3'- aGCGGCC-----------CUGGCGCUCGa-----AAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 22021 0.69 0.891992
Target:  5'- aCGCCGGcGACCGUGgaAGCgcacagcGUGCg -3'
miRNA:   3'- aGCGGCC-CUGGCGC--UCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 53362 0.69 0.898787
Target:  5'- cUGCUGGcGGCCGCGGGCa-------- -3'
miRNA:   3'- aGCGGCC-CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 106401 0.69 0.898787
Target:  5'- -gGuCCGGGcCCGCGAGCUUc------ -3'
miRNA:   3'- agC-GGCCCuGGCGCUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 3588 0.69 0.898787
Target:  5'- -gGuCCGGGcCCGCGAGCUUc------ -3'
miRNA:   3'- agC-GGCCCuGGCGCUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 54502 0.69 0.898787
Target:  5'- gCGCCGGGGCCG-GGGUggggg--GCg -3'
miRNA:   3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 33847 0.69 0.898787
Target:  5'- gUCGCggCGGGAgagaCCGCGGGCUggGgg-GCg -3'
miRNA:   3'- -AGCG--GCCCU----GGCGCUCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 108085 0.69 0.905334
Target:  5'- cCGCCcggGGGGCUGCGGGCcucucUUGUAUc- -3'
miRNA:   3'- aGCGG---CCCUGGCGCUCGa----AAUAUAug -5'
6354 3' -52.4 NC_001847.1 + 73976 0.69 0.905334
Target:  5'- cUCGCCGaGGACCa-GAGCUUgc--UGCg -3'
miRNA:   3'- -AGCGGC-CCUGGcgCUCGAAauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 53595 0.69 0.905334
Target:  5'- cUGCgCGGGGCCGgCGAGCUc------- -3'
miRNA:   3'- aGCG-GCCCUGGC-GCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 31096 0.69 0.911631
Target:  5'- gCGCUGGGGCCGgGcAGCgcgGUggcAUGCc -3'
miRNA:   3'- aGCGGCCCUGGCgC-UCGaaaUA---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 27216 0.69 0.911631
Target:  5'- gCGCCGGGGCgCuCGAGCUgcggGUcGCa -3'
miRNA:   3'- aGCGGCCCUG-GcGCUCGAaauaUA-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.