miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 120358 0.69 0.911631
Target:  5'- gCGCuacaaCGGGACCGuCGAGCUgc---UGCg -3'
miRNA:   3'- aGCG-----GCCCUGGC-GCUCGAaauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 69269 0.69 0.911631
Target:  5'- cUGgCGGcGGCCGCGGGCUUccucUACg -3'
miRNA:   3'- aGCgGCC-CUGGCGCUCGAAauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 27216 0.69 0.911631
Target:  5'- gCGCCGGGGCgCuCGAGCUgcggGUcGCa -3'
miRNA:   3'- aGCGGCCCUG-GcGCUCGAaauaUA-UG- -5'
6354 3' -52.4 NC_001847.1 + 123510 0.68 0.917674
Target:  5'- -gGCCGGGgccagggcuGCCGCGGGCUc------- -3'
miRNA:   3'- agCGGCCC---------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 5824 0.68 0.917674
Target:  5'- gCGCCGGGugCGUGcAGCa-------- -3'
miRNA:   3'- aGCGGCCCugGCGC-UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 59509 0.68 0.917674
Target:  5'- gCGCCGaGGCCGCaccGGCUUg--GUGCg -3'
miRNA:   3'- aGCGGCcCUGGCGc--UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 111327 0.68 0.923462
Target:  5'- gCGCU-GGACCGCGAGCa-------- -3'
miRNA:   3'- aGCGGcCCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 46880 0.68 0.923462
Target:  5'- -aGCCGGGACgcgUGCGAGCg-------- -3'
miRNA:   3'- agCGGCCCUG---GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 35999 0.68 0.923462
Target:  5'- gCGCUgcaGGcGGCCGCGGGCgug--GUGCu -3'
miRNA:   3'- aGCGG---CC-CUGGCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 892 0.68 0.923462
Target:  5'- gCGCCGGGGCCGCcgcGGCc-------- -3'
miRNA:   3'- aGCGGCCCUGGCGc--UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 122389 0.68 0.923462
Target:  5'- -gGCCGGcGACUGCGcGCUcauccgcAUAUACg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGAaa-----UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 47409 0.68 0.923462
Target:  5'- aCGUCGuagacGGCCGUGAGCUUcuccgagAUGUACg -3'
miRNA:   3'- aGCGGCc----CUGGCGCUCGAAa------UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 118690 0.68 0.923462
Target:  5'- -gGCCGGG-CCGCagccccGGCUggGUAUAUa -3'
miRNA:   3'- agCGGCCCuGGCGc-----UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 103705 0.68 0.923462
Target:  5'- gCGCCGGGGCCGCcgcGGCc-------- -3'
miRNA:   3'- aGCGGCCCUGGCGc--UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 101349 0.68 0.923462
Target:  5'- gCGCCGGGcGCCGCGcGCa-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 68878 0.68 0.928995
Target:  5'- cCGcCCGGGagucGCCGCGAGCa-------- -3'
miRNA:   3'- aGC-GGCCC----UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 87875 0.68 0.928995
Target:  5'- gUCGCUGuGGCCGCGcGGCUUUcUGgGCg -3'
miRNA:   3'- -AGCGGCcCUGGCGC-UCGAAAuAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 127092 0.68 0.928995
Target:  5'- gCGCgCGGG-CCGCGcGGCUUUGg---- -3'
miRNA:   3'- aGCG-GCCCuGGCGC-UCGAAAUauaug -5'
6354 3' -52.4 NC_001847.1 + 58584 0.68 0.928995
Target:  5'- -gGCCGGG-CCGCcGGCUgcGUGgGCa -3'
miRNA:   3'- agCGGCCCuGGCGcUCGAaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 33236 0.68 0.928995
Target:  5'- gCGCCGGGcGCCGCG-GCg-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCuCGaaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.