miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 113963 0.67 0.960284
Target:  5'- cCGCCGGGcgcgucGCCGCagaagcgcuccagGAGC---GUAUACa -3'
miRNA:   3'- aGCGGCCC------UGGCG-------------CUCGaaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 79266 0.67 0.956869
Target:  5'- gCGUCGGG-CCGCGcGGCgaagcgGUGCc -3'
miRNA:   3'- aGCGGCCCuGGCGC-UCGaaaua-UAUG- -5'
6354 3' -52.4 NC_001847.1 + 24520 0.67 0.956869
Target:  5'- gCGUCGGGGCuCGCGcGCUgcacgAUuuccGUGCa -3'
miRNA:   3'- aGCGGCCCUG-GCGCuCGAaa---UA----UAUG- -5'
6354 3' -52.4 NC_001847.1 + 63346 0.67 0.956869
Target:  5'- cUCGCCGcccaGGGgCGCGuGCggcacUGUGUACu -3'
miRNA:   3'- -AGCGGC----CCUgGCGCuCGaa---AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 15780 0.67 0.956869
Target:  5'- uUCGCCGGcGgcaagcGCCGCGcggcgggaGGCggcgGUGUACg -3'
miRNA:   3'- -AGCGGCC-C------UGGCGC--------UCGaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 125207 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 88444 0.67 0.952846
Target:  5'- uUCGgCGuGGGCCGCGGGCc-------- -3'
miRNA:   3'- -AGCgGC-CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 69230 0.67 0.952846
Target:  5'- gUCGCCGGcGCCGCGGcaacGCUggcc-UACu -3'
miRNA:   3'- -AGCGGCCcUGGCGCU----CGAaauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 22394 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 68932 0.67 0.952846
Target:  5'- -gGCgCGGcGGCCGCGGGCUg------- -3'
miRNA:   3'- agCG-GCC-CUGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 53714 0.67 0.952846
Target:  5'- cCGCCGGcGGCuCGCgGGGCgg-AUcgGCg -3'
miRNA:   3'- aGCGGCC-CUG-GCG-CUCGaaaUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 78672 0.67 0.952846
Target:  5'- gUCGCCGGcGugcGCaCGCGGGCgcug-GUGCc -3'
miRNA:   3'- -AGCGGCC-C---UG-GCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 46217 0.67 0.952846
Target:  5'- cCGCCGGGccgGCCGCGGGg--------- -3'
miRNA:   3'- aGCGGCCC---UGGCGCUCgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 73307 0.67 0.952846
Target:  5'- aCGCCGGcGACgGCGAGUc-------- -3'
miRNA:   3'- aGCGGCC-CUGgCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 3486 0.67 0.951592
Target:  5'- gCGCCGaGAgcucgcacaugagcCgCGCGAGCUUcGUGUACg -3'
miRNA:   3'- aGCGGCcCU--------------G-GCGCUCGAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 54386 0.67 0.951169
Target:  5'- gCGgCGGGcgGCCGCGGGCgaggcggGCg -3'
miRNA:   3'- aGCgGCCC--UGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 32914 0.67 0.948578
Target:  5'- -aGCCGGGGCCGCGGa---------- -3'
miRNA:   3'- agCGGCCCUGGCGCUcgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 110200 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 41624 0.67 0.948578
Target:  5'- cCGCCGugauGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCc---CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 14037 0.67 0.948578
Target:  5'- gCGCUGGucGGCCGCGAGCc-------- -3'
miRNA:   3'- aGCGGCC--CUGGCGCUCGaaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.