miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 59509 0.68 0.917674
Target:  5'- gCGCCGaGGCCGCaccGGCUUg--GUGCg -3'
miRNA:   3'- aGCGGCcCUGGCGc--UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 118690 0.68 0.923462
Target:  5'- -gGCCGGG-CCGCagccccGGCUggGUAUAUa -3'
miRNA:   3'- agCGGCCCuGGCGc-----UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 57302 0.75 0.608836
Target:  5'- cUGCCGGG-CCGCGAGCUc------- -3'
miRNA:   3'- aGCGGCCCuGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 70378 0.72 0.744488
Target:  5'- gCGCCGGGG-CGCGAGCUc------- -3'
miRNA:   3'- aGCGGCCCUgGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 132006 0.72 0.774069
Target:  5'- cCGCCGGcGCCGCcGGGCUcccgGUGCu -3'
miRNA:   3'- aGCGGCCcUGGCG-CUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 9660 0.71 0.819638
Target:  5'- -aGCCGGGcguccucgcgcccGCCGCGAGCUg------- -3'
miRNA:   3'- agCGGCCC-------------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 30112 0.7 0.870163
Target:  5'- gUGCCGGGGCaGCaGAuGCUggcgAUAUACg -3'
miRNA:   3'- aGCGGCCCUGgCG-CU-CGAaa--UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 105597 0.69 0.884953
Target:  5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 106401 0.69 0.898787
Target:  5'- -gGuCCGGGcCCGCGAGCUUc------ -3'
miRNA:   3'- agC-GGCCCuGGCGCUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 31096 0.69 0.911631
Target:  5'- gCGCUGGGGCCGgGcAGCgcgGUggcAUGCc -3'
miRNA:   3'- aGCGGCCCUGGCgC-UCGaaaUA---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 53882 0.66 0.967515
Target:  5'- cCGCgGGGGCgGCGGGCc-------- -3'
miRNA:   3'- aGCGgCCCUGgCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 100650 0.66 0.964198
Target:  5'- gCGCCaGGGCCGCGcuGCUgcg---GCg -3'
miRNA:   3'- aGCGGcCCUGGCGCu-CGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 44528 0.68 0.928995
Target:  5'- cCGCCGu--CCGCGAGCUcgcgGUGCc -3'
miRNA:   3'- aGCGGCccuGGCGCUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 97295 0.68 0.934272
Target:  5'- aCaCCGGGACCGCGGGgCgc---GUGCc -3'
miRNA:   3'- aGcGGCCCUGGCGCUC-GaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 132407 0.67 0.944062
Target:  5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5'
6354 3' -52.4 NC_001847.1 + 41624 0.67 0.948578
Target:  5'- cCGCCGugauGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCc---CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 54386 0.67 0.951169
Target:  5'- gCGgCGGGcgGCCGCGGGCgaggcggGCg -3'
miRNA:   3'- aGCgGCCC--UGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 46217 0.67 0.952846
Target:  5'- cCGCCGGGccgGCCGCGGGg--------- -3'
miRNA:   3'- aGCGGCCC---UGGCGCUCgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 24520 0.67 0.956869
Target:  5'- gCGUCGGGGCuCGCGcGCUgcacgAUuuccGUGCa -3'
miRNA:   3'- aGCGGCCCUG-GCGCuCGAaa---UA----UAUG- -5'
6354 3' -52.4 NC_001847.1 + 105108 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.