Results 101 - 120 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 53589 | 0.67 | 0.87317 |
Target: 5'- gCGCAGCugcGCGGggccggCGAgcUCGGCCgCCg -3' miRNA: 3'- gGCGUCGcaaCGCCa-----GUU--AGUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 30613 | 0.67 | 0.87317 |
Target: 5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3' miRNA: 3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 47207 | 0.67 | 0.87317 |
Target: 5'- aCGCucaccGCGUgcGCGGcCGcgccCAGCCCCa -3' miRNA: 3'- gGCGu----CGCAa-CGCCaGUua--GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 50512 | 0.67 | 0.87317 |
Target: 5'- gCGCAGCaGccGCGG-CAu--GGCCCCg -3' miRNA: 3'- gGCGUCG-CaaCGCCaGUuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 67478 | 0.67 | 0.87317 |
Target: 5'- gCCGCGGCGUcgucGCaGUCAcaGUCguaaucguAGCCgCCg -3' miRNA: 3'- -GGCGUCGCAa---CGcCAGU--UAG--------UCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 47422 | 0.67 | 0.87317 |
Target: 5'- -gGCGGCGUcUGCGacGUCG-UCGGCUUCg -3' miRNA: 3'- ggCGUCGCA-ACGC--CAGUuAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 90473 | 0.67 | 0.87317 |
Target: 5'- uCCGCGGCucgccggucacgGUgcagGCGGggCAG-CAGCCuCCg -3' miRNA: 3'- -GGCGUCG------------CAa---CGCCa-GUUaGUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 102297 | 0.67 | 0.87317 |
Target: 5'- gCGCgAGCGccGCGGUCucggCGGCCa- -3' miRNA: 3'- gGCG-UCGCaaCGCCAGuua-GUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 83264 | 0.67 | 0.870232 |
Target: 5'- gCGCGGCGgggGCGGgcgCAGaggcgcacaccugCGGCCUCc -3' miRNA: 3'- gGCGUCGCaa-CGCCa--GUUa------------GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 74311 | 0.67 | 0.86576 |
Target: 5'- gCGCAGCGccGCGGg----C-GCCCCu -3' miRNA: 3'- gGCGUCGCaaCGCCaguuaGuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 102152 | 0.67 | 0.86576 |
Target: 5'- aCCaCGGCGgcGCGGcccgccgCAAgcUCAGCCgCCa -3' miRNA: 3'- -GGcGUCGCaaCGCCa------GUU--AGUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 128783 | 0.67 | 0.86576 |
Target: 5'- gCCGCAGCGgcuacgcccGCGGcgCGGUU-GCCgCCg -3' miRNA: 3'- -GGCGUCGCaa-------CGCCa-GUUAGuCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 53086 | 0.67 | 0.86576 |
Target: 5'- cCCGgcuCAGCGUucgGCGGggCGG-CGGCCCg -3' miRNA: 3'- -GGC---GUCGCAa--CGCCa-GUUaGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 101641 | 0.67 | 0.86576 |
Target: 5'- uCCGUGuCGUcaaugGCGGUCAGgucggaggugcUgAGCCCCg -3' miRNA: 3'- -GGCGUcGCAa----CGCCAGUU-----------AgUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 13149 | 0.67 | 0.86576 |
Target: 5'- gCCGCGGCcg-GCGGUUGGgcugcuggCAGCCa- -3' miRNA: 3'- -GGCGUCGcaaCGCCAGUUa-------GUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 59320 | 0.67 | 0.86576 |
Target: 5'- gCGCGGCGccgGCGGcgcCGuacCAGCCCg -3' miRNA: 3'- gGCGUCGCaa-CGCCa--GUua-GUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 101393 | 0.67 | 0.86576 |
Target: 5'- cCCGCGGCGccGcCGG-CAAUCGGgggucucgucUCCCg -3' miRNA: 3'- -GGCGUCGCaaC-GCCaGUUAGUC----------GGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 116578 | 0.67 | 0.858139 |
Target: 5'- gCGCGGCacacggGcCGGUCAccgAGCCCCg -3' miRNA: 3'- gGCGUCGcaa---C-GCCAGUuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 100591 | 0.67 | 0.858139 |
Target: 5'- gCCGCuGCa--GCGGcCGAgCAGCCCg -3' miRNA: 3'- -GGCGuCGcaaCGCCaGUUaGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 78203 | 0.67 | 0.858139 |
Target: 5'- cUCGCGGCGgcUGCGGUgCAccGUCGuGUUCCc -3' miRNA: 3'- -GGCGUCGCa-ACGCCA-GU--UAGU-CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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