miRNA display CGI


Results 81 - 100 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 90741 0.66 0.887336
Target:  5'- cUCGCGGCGc-GUGGcCG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 99017 0.66 0.887336
Target:  5'- uCCGCGGCGcgcGCGGcuUCGuggaaGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC--AGUuag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 132179 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 69600 0.66 0.885268
Target:  5'- aCCGCgugaguauaaaacgAGCGgcGCGGcCGggCGGCCgCa -3'
miRNA:   3'- -GGCG--------------UCGCaaCGCCaGUuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 35295 0.67 0.88318
Target:  5'- aCGguGCGUggGCGGgggcgggCAAcgcaaagcacuaagCGGCCCCc -3'
miRNA:   3'- gGCguCGCAa-CGCCa------GUUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134946 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67544 0.67 0.880364
Target:  5'- uCCGCAgGCGcggGCGGUUcucccaGAUCGGCgCg -3'
miRNA:   3'- -GGCGU-CGCaa-CGCCAG------UUAGUCGgGg -5'
6354 5' -55.7 NC_001847.1 + 88370 0.67 0.880364
Target:  5'- gCGCGGgCGcgGCGGac---CGGCCCCg -3'
miRNA:   3'- gGCGUC-GCaaCGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 13551 0.67 0.880364
Target:  5'- gCCGgGGCGgcGCGGUgGGUUGcauugccaaauGCCCUu -3'
miRNA:   3'- -GGCgUCGCaaCGCCAgUUAGU-----------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 33701 0.67 0.880364
Target:  5'- cUCGCGGCGcgGCGG-CGcgUGGCCg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 43454 0.67 0.880364
Target:  5'- cCCGgGGCGacggcGCGGUCGccgagcgcgcgAUCGcGUCCCg -3'
miRNA:   3'- -GGCgUCGCaa---CGCCAGU-----------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 42069 0.67 0.880364
Target:  5'- gCUGguGcCGcUGCGG-CGcAUCGGCCUCg -3'
miRNA:   3'- -GGCguC-GCaACGCCaGU-UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 44038 0.67 0.880364
Target:  5'- gCUGCAGCGaggcGCGcGUCGGggCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa--CGC-CAGUUa-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50801 0.67 0.880364
Target:  5'- cUCGCGGCGcUGCGGcCGGUaCGGUuuUa -3'
miRNA:   3'- -GGCGUCGCaACGCCaGUUA-GUCGggG- -5'
6354 5' -55.7 NC_001847.1 + 53772 0.67 0.880364
Target:  5'- -gGCGGCGaggGCGG-CAGcaccgCAGCCgCCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa----GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 32133 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67059 0.67 0.880364
Target:  5'- aCCGCucGCGccGCGG-CGuUC-GCCCCg -3'
miRNA:   3'- -GGCGu-CGCaaCGCCaGUuAGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 15549 0.67 0.880364
Target:  5'- gCCGguGCGcgcGCGGccgUCGGgccgCGGCCgCCg -3'
miRNA:   3'- -GGCguCGCaa-CGCC---AGUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 90473 0.67 0.87317
Target:  5'- uCCGCGGCucgccggucacgGUgcagGCGGggCAG-CAGCCuCCg -3'
miRNA:   3'- -GGCGUCG------------CAa---CGCCa-GUUaGUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.