miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 105105 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65113 0.66 0.894081
Target:  5'- gCCGCGGCucggcugGCGGUgGGgcUCGGCUUCc -3'
miRNA:   3'- -GGCGUCGcaa----CGCCAgUU--AGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 100759 0.66 0.894081
Target:  5'- gCCGCGGCG--GCGGcCGccguuguuUCGGCCgCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUu-------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 60648 0.66 0.894081
Target:  5'- gCGCGGCGcaggcGCGGcugcugcaUCAAcacgccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa---CGCC--------AGUUa-----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118264 0.66 0.894081
Target:  5'- aCGCAGCGgugGUGGUgAuGUCucuccaggAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCAgU-UAG--------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 56097 0.66 0.894081
Target:  5'- gCGCcGCGUUaaGCGcGUCGAUguGCCa- -3'
miRNA:   3'- gGCGuCGCAA--CGC-CAGUUAguCGGgg -5'
6354 5' -55.7 NC_001847.1 + 58382 0.66 0.894081
Target:  5'- cUCGUAGCGggugccgGCGGgCAG-CAGCUCUu -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2292 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 11058 0.66 0.887336
Target:  5'- gCCGCAGCG--GCGG-CAGUUcaccuGCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAGu----CGGGg -5'
6354 5' -55.7 NC_001847.1 + 102278 0.66 0.887336
Target:  5'- gCCGuCGGCcgccgUGaGGUCGAUgGGCCCg -3'
miRNA:   3'- -GGC-GUCGca---ACgCCAGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 133536 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 99017 0.66 0.887336
Target:  5'- uCCGCGGCGcgcGCGGcuUCGuggaaGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC--AGUuag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 132341 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132179 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 74140 0.66 0.887336
Target:  5'- gCGCGGCGccgaugGCGGccUCGA-CGGCgCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCC--AGUUaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 30723 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 29528 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58459 0.66 0.887336
Target:  5'- gCCGCAGCGccGCgcgcgugaacgGGUCGAaaaaGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCG-----------CCAGUUag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 29366 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.