miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 62500 0.7 0.7135
Target:  5'- gCCGCGGgGUgGCGGcCA--CAGCCgCCc -3'
miRNA:   3'- -GGCGUCgCAaCGCCaGUuaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 132144 0.7 0.733321
Target:  5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3'
miRNA:   3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 134244 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 8581 0.73 0.570873
Target:  5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3'
miRNA:   3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 83506 0.72 0.607547
Target:  5'- gCCGCGGCGcugcgugccuuccUGCGGUCcGUgCGccGCCCCg -3'
miRNA:   3'- -GGCGUCGCa------------ACGCCAGuUA-GU--CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 97100 0.72 0.611643
Target:  5'- gCCGCGGCGgcGCGGUU----GGCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGuuagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 16636 0.71 0.632149
Target:  5'- gCGCGGCGgcuuUGCcGUCGG--GGCCCCg -3'
miRNA:   3'- gGCGUCGCa---ACGcCAGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3237 0.71 0.662887
Target:  5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3'
miRNA:   3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 92660 0.7 0.6934
Target:  5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3'
miRNA:   3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 59403 0.7 0.70348
Target:  5'- gCCGgcggaGGCGcgGCGGUC-AUCGcugcGCCCCg -3'
miRNA:   3'- -GGCg----UCGCaaCGCCAGuUAGU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30566 0.68 0.837378
Target:  5'- uCCGCGGCGUcuggGacgaGGUCcagGAggaccgccgcguagCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCAa---Cg---CCAG---UUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78956 0.68 0.834068
Target:  5'- cCCGCAGgcugGCGcUCGcgCAGCCUCg -3'
miRNA:   3'- -GGCGUCgcaaCGCcAGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 65443 0.69 0.771832
Target:  5'- gCCGC-GCGccGCGGacCGAgcgcCGGCCCCg -3'
miRNA:   3'- -GGCGuCGCaaCGCCa-GUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 90780 0.69 0.781169
Target:  5'- gCGCGGCGa-GgGGcccguUCAG-CAGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCgCC-----AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36701 0.68 0.799432
Target:  5'- -aGCGGCGUgguggagGCGGcuUCGGUC-GCCgCCg -3'
miRNA:   3'- ggCGUCGCAa------CGCC--AGUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 26554 0.68 0.799432
Target:  5'- gCGC-GCG-UGCGGUgCAGcaaguagcUCAGCCCg -3'
miRNA:   3'- gGCGuCGCaACGCCA-GUU--------AGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 134776 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3827 0.68 0.817088
Target:  5'- gCCGCgAGCGUgGCGuuguUCGcgCcGCCCCa -3'
miRNA:   3'- -GGCG-UCGCAaCGCc---AGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104069 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 121170 0.68 0.829049
Target:  5'- gCCGCGGaCGUgcgcgacaUGCGGgagcggcacuugcgCGGggCGGCCCCc -3'
miRNA:   3'- -GGCGUC-GCA--------ACGCCa-------------GUUa-GUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.