Results 61 - 80 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 73862 | 0.71 | 0.652655 |
Target: 5'- gCCGCGgugcGCGggGCGcGUCAGUUccgccggcGCCCCg -3' miRNA: 3'- -GGCGU----CGCaaCGC-CAGUUAGu-------CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 16663 | 0.71 | 0.662887 |
Target: 5'- -gGCGGCGcggGCGcGUCGcgCAGCCUUg -3' miRNA: 3'- ggCGUCGCaa-CGC-CAGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 80959 | 0.71 | 0.662887 |
Target: 5'- uCCGCgAGCGc-GCGGUCAAaguGCUCCg -3' miRNA: 3'- -GGCG-UCGCaaCGCCAGUUaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 3237 | 0.71 | 0.662887 |
Target: 5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3' miRNA: 3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 31961 | 0.71 | 0.662887 |
Target: 5'- gCCGCGGCG--GCGG-CG---GGCCCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 58173 | 0.71 | 0.662887 |
Target: 5'- aCCGCGGCGggGUcGUCAA--AGCCgCCu -3' miRNA: 3'- -GGCGUCGCaaCGcCAGUUagUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 134581 | 0.71 | 0.673095 |
Target: 5'- gUCGCcGCcagGCaGGUCAAUCGuGCCCCc -3' miRNA: 3'- -GGCGuCGcaaCG-CCAGUUAGU-CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 19336 | 0.71 | 0.673095 |
Target: 5'- gCCGCAGCGcagcgcGCGGagccgCAG-CGGCUCCg -3' miRNA: 3'- -GGCGUCGCaa----CGCCa----GUUaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 94613 | 0.71 | 0.673095 |
Target: 5'- gCCGCAGCacGUcGCGcGUCGcgcgCAGCCgCCg -3' miRNA: 3'- -GGCGUCG--CAaCGC-CAGUua--GUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 68342 | 0.71 | 0.673095 |
Target: 5'- gCCGCucGGCGUcGUGGUagcCGGUCgugagcacgAGCCCCg -3' miRNA: 3'- -GGCG--UCGCAaCGCCA---GUUAG---------UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 92660 | 0.7 | 0.6934 |
Target: 5'- cCCGCAGCGcuuCGG-CGcgCcGCCCCa -3' miRNA: 3'- -GGCGUCGCaacGCCaGUuaGuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 54396 | 0.7 | 0.6934 |
Target: 5'- gCCGCgGGCGagGCGGgcgccgccgCGGUUGGCCUCg -3' miRNA: 3'- -GGCG-UCGCaaCGCCa--------GUUAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 132268 | 0.7 | 0.6934 |
Target: 5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3' miRNA: 3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 6937 | 0.7 | 0.6934 |
Target: 5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCUg -3' miRNA: 3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 29455 | 0.7 | 0.6934 |
Target: 5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3' miRNA: 3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 61974 | 0.7 | 0.70348 |
Target: 5'- cCCGcCGGCGcgGCGGgcaUAAUgGGCCCg -3' miRNA: 3'- -GGC-GUCGCaaCGCCa--GUUAgUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 14561 | 0.7 | 0.70348 |
Target: 5'- gCCGCAGCGcgggugcugGCGGgCGcgCGGCUCUc -3' miRNA: 3'- -GGCGUCGCaa-------CGCCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 59403 | 0.7 | 0.70348 |
Target: 5'- gCCGgcggaGGCGcgGCGGUC-AUCGcugcGCCCCg -3' miRNA: 3'- -GGCg----UCGCaaCGCCAGuUAGU----CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 78330 | 0.7 | 0.70348 |
Target: 5'- gCCGCgggcccggcuugGGCGccGCGGcggCGAaCAGCCCCu -3' miRNA: 3'- -GGCG------------UCGCaaCGCCa--GUUaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 42565 | 0.7 | 0.70348 |
Target: 5'- gCCGCguccuccucGGCGgcGCGGUUGAUCaAGCUCa -3' miRNA: 3'- -GGCG---------UCGCaaCGCCAGUUAG-UCGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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