miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 39773 0.72 0.611643
Target:  5'- -aGcCGGCGgcGCGGUCcgccgcCAGCCCCc -3'
miRNA:   3'- ggC-GUCGCaaCGCCAGuua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 96407 0.72 0.611643
Target:  5'- gCCgGCGGCGgcaaugGCGGggccggcggCAGgcgCGGCCCCg -3'
miRNA:   3'- -GG-CGUCGCaa----CGCCa--------GUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 5051 0.72 0.611643
Target:  5'- cCCaGCccGCGUcGCGGUCGGgcgCGGCCCa -3'
miRNA:   3'- -GG-CGu-CGCAaCGCCAGUUa--GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 97100 0.72 0.611643
Target:  5'- gCCGCGGCGgcGCGGUU----GGCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGuuagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 28294 0.72 0.611643
Target:  5'- aCGCGGCG-UGCgugGGUguGUUAGgCCCCg -3'
miRNA:   3'- gGCGUCGCaACG---CCAguUAGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 118978 0.72 0.621892
Target:  5'- uCCGCGGCcaacGggGCGGUCGcccCGGCCUUg -3'
miRNA:   3'- -GGCGUCG----CaaCGCCAGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 28403 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 131216 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 118371 0.72 0.621892
Target:  5'- cCCGCcguGCGgcGCGG-CAuucucAUCGGCCUCg -3'
miRNA:   3'- -GGCGu--CGCaaCGCCaGU-----UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83195 0.72 0.621892
Target:  5'- gCCGCGGgGUcgcGCGG-CcGUCGcGCCCCg -3'
miRNA:   3'- -GGCGUCgCAa--CGCCaGuUAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 15994 0.72 0.621892
Target:  5'- cCCGCGGCGgccGCGGcgccgacgagcUCGccAUCgacGGCCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC-----------AGU--UAG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60743 0.72 0.621892
Target:  5'- cCCGCGcgcGCGcgGCGGcCGcgCGGUCCCc -3'
miRNA:   3'- -GGCGU---CGCaaCGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 69755 0.71 0.631123
Target:  5'- cCCGguGCGcgGCGGUCAagugcgcgcgaaaGUCAGCgggCUCg -3'
miRNA:   3'- -GGCguCGCaaCGCCAGU-------------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 32334 0.71 0.632149
Target:  5'- gCGCGGCGcggcGCGGagGGggccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa--CGCCagUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16636 0.71 0.632149
Target:  5'- gCGCGGCGgcuuUGCcGUCGG--GGCCCCg -3'
miRNA:   3'- gGCGUCGCa---ACGcCAGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 78045 0.71 0.642406
Target:  5'- gCGCGGCGgcGCGG-CGGUCcagcgcagcgcuGGCCgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUAG------------UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 53742 0.71 0.642406
Target:  5'- gCGCGGCGUagcGCGGaUCcggCGGCCCg -3'
miRNA:   3'- gGCGUCGCAa--CGCC-AGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 73183 0.71 0.642406
Target:  5'- aCGCGGCG--GCGG--AGUCGGCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCagUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 53881 0.71 0.646507
Target:  5'- gCCGCGGgGgcgGCGGgccccccguccucgCGA-CGGCCCCg -3'
miRNA:   3'- -GGCGUCgCaa-CGCCa-------------GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 120595 0.71 0.652655
Target:  5'- cCCGCGcuGCGgcGCGGUCAuacucCAGCCg- -3'
miRNA:   3'- -GGCGU--CGCaaCGCCAGUua---GUCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.