miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 1135 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50918 0.66 0.918732
Target:  5'- cCCGCGGCGgccccgGCcGUCAG--GGCCUg -3'
miRNA:   3'- -GGCGUCGCaa----CGcCAGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 62717 0.66 0.918732
Target:  5'- gCGCAuguuccGCGUUGCGGcCGuggCcGUCCCc -3'
miRNA:   3'- gGCGU------CGCAACGCCaGUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 72589 0.66 0.918732
Target:  5'- aCCGCGGcCGcgGCGG-CAGaaggggCAGCCgCu -3'
miRNA:   3'- -GGCGUC-GCaaCGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 121392 0.66 0.918732
Target:  5'- gCCcauCAGcCGcUGCG--CGAUCAGCCCCa -3'
miRNA:   3'- -GGc--GUC-GCaACGCcaGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 53308 0.66 0.912924
Target:  5'- gCCGcCAGUGcgGCGGgcgaCAGgacggCGcGCCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa---GUUa----GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 131607 0.66 0.906878
Target:  5'- gCCGCcGCGcucGCGGccgUAGUCGGCCa- -3'
miRNA:   3'- -GGCGuCGCaa-CGCCa--GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 124338 0.66 0.900597
Target:  5'- -aGCAGCGc-GCGG-CAGU-AGCCCa -3'
miRNA:   3'- ggCGUCGCaaCGCCaGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 131923 0.66 0.900597
Target:  5'- gCCGCGGCGgcGCGGaggCAcgU-GCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa--GUuaGuCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 48520 0.66 0.900597
Target:  5'- aCGCAGaCGUUGUGGcccgccUCGAggCGcGCCCg -3'
miRNA:   3'- gGCGUC-GCAACGCC------AGUUa-GU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 56141 0.66 0.900597
Target:  5'- gCGCAGCcuccGggGUGGcUCAG-CAGCCgCCc -3'
miRNA:   3'- gGCGUCG----CaaCGCC-AGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 124642 0.66 0.900597
Target:  5'- cCCGCAgcagcGCGggGCcGUCGGggaAGCCCa -3'
miRNA:   3'- -GGCGU-----CGCaaCGcCAGUUag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 14370 0.66 0.906878
Target:  5'- gCCGcCAGCGc-GCGGUCGuagaGGCUCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 85729 0.66 0.906878
Target:  5'- -gGCugGGCGUUaGCuuGG-CcGUCAGCCCCg -3'
miRNA:   3'- ggCG--UCGCAA-CG--CCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 113931 0.66 0.906878
Target:  5'- -aGCAGCGc-GCGGUCGcggCGGCgUCu -3'
miRNA:   3'- ggCGUCGCaaCGCCAGUua-GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 2232 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37338 0.66 0.906878
Target:  5'- gCGCuGGCG-UGCGGUCAugcggcggGUCgAGCCg- -3'
miRNA:   3'- gGCG-UCGCaACGCCAGU--------UAG-UCGGgg -5'
6354 5' -55.7 NC_001847.1 + 82132 0.66 0.906878
Target:  5'- gCGCAGCGgccGCcG-CuGUCGGCUCCg -3'
miRNA:   3'- gGCGUCGCaa-CGcCaGuUAGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.