miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 85729 0.66 0.906878
Target:  5'- -gGCugGGCGUUaGCuuGG-CcGUCAGCCCCg -3'
miRNA:   3'- ggCG--UCGCAA-CG--CCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 113931 0.66 0.906878
Target:  5'- -aGCAGCGc-GCGGUCGcggCGGCgUCu -3'
miRNA:   3'- ggCGUCGCaaCGCCAGUua-GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 116257 0.66 0.918162
Target:  5'- aCGCGGCGcUGCGGacucuggcgccgcUCGGcgaggCAgcguGCCCCg -3'
miRNA:   3'- gGCGUCGCaACGCC-------------AGUUa----GU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 69681 0.66 0.918732
Target:  5'- -gGCAGCGUUgggcGCGGggccggCGcUCGGUCCg -3'
miRNA:   3'- ggCGUCGCAA----CGCCa-----GUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 98981 0.66 0.918732
Target:  5'- gCCGCaAGCGUUGCcugCAGccgcugCAGgCCCg -3'
miRNA:   3'- -GGCG-UCGCAACGccaGUUa-----GUCgGGG- -5'
6354 5' -55.7 NC_001847.1 + 1135 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50918 0.66 0.918732
Target:  5'- cCCGCGGCGgccccgGCcGUCAG--GGCCUg -3'
miRNA:   3'- -GGCGUCGCaa----CGcCAGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 62717 0.66 0.918732
Target:  5'- gCGCAuguuccGCGUUGCGGcCGuggCcGUCCCc -3'
miRNA:   3'- gGCGU------CGCAACGCCaGUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 72589 0.66 0.918732
Target:  5'- aCCGCGGcCGcgGCGG-CAGaaggggCAGCCgCu -3'
miRNA:   3'- -GGCGUC-GCaaCGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 121392 0.66 0.918732
Target:  5'- gCCcauCAGcCGcUGCG--CGAUCAGCCCCa -3'
miRNA:   3'- -GGc--GUC-GCaACGCcaGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 123072 0.66 0.912924
Target:  5'- cCCGCGGCGcuccGCGGcC--UCGGCgUCCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 91873 0.66 0.912924
Target:  5'- gCGCGGCGUcGCaG-CAGgu-GCCCCc -3'
miRNA:   3'- gGCGUCGCAaCGcCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2232 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37338 0.66 0.906878
Target:  5'- gCGCuGGCG-UGCGGUCAugcggcggGUCgAGCCg- -3'
miRNA:   3'- gGCG-UCGCaACGCCAGU--------UAG-UCGGgg -5'
6354 5' -55.7 NC_001847.1 + 82132 0.66 0.906878
Target:  5'- gCGCAGCGgccGCcG-CuGUCGGCUCCg -3'
miRNA:   3'- gGCGUCGCaa-CGcCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 131607 0.66 0.906878
Target:  5'- gCCGCcGCGcucGCGGccgUAGUCGGCCa- -3'
miRNA:   3'- -GGCGuCGCaa-CGCCa--GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 53308 0.66 0.912924
Target:  5'- gCCGcCAGUGcgGCGGgcgaCAGgacggCGcGCCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa---GUUa----GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 105440 0.66 0.912924
Target:  5'- gCCGCAGUcucGCGcccaagCGAUCAGCgCCa -3'
miRNA:   3'- -GGCGUCGcaaCGCca----GUUAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 36393 0.66 0.912924
Target:  5'- aCCGCuAGCGaUGCcccGGcCc--CGGCCCCg -3'
miRNA:   3'- -GGCG-UCGCaACG---CCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 86386 0.66 0.912924
Target:  5'- gCCGCGGCG--GCGGgCGcgCGGCUg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.