Results 21 - 40 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 31431 | 0.74 | 0.472776 |
Target: 5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3' miRNA: 3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 58005 | 0.74 | 0.488908 |
Target: 5'- gCGCAgGCGgcgGCGGUCGcgcgcgcgccuugaAgCAGCCCCg -3' miRNA: 3'- gGCGU-CGCaa-CGCCAGU--------------UaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 125555 | 0.73 | 0.560772 |
Target: 5'- cCCGCGGC--UGCGGcUCGAUCgcGGCCgCg -3' miRNA: 3'- -GGCGUCGcaACGCC-AGUUAG--UCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 104521 | 0.73 | 0.520927 |
Target: 5'- gCCGCcGCGuUUGCGGcgcugCGcggCGGCCCCg -3' miRNA: 3'- -GGCGuCGC-AACGCCa----GUua-GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 47059 | 0.73 | 0.530793 |
Target: 5'- gUCGCGGcCGgcGCGGUCGAUgcCAGCCa- -3' miRNA: 3'- -GGCGUC-GCaaCGCCAGUUA--GUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 27791 | 0.73 | 0.550721 |
Target: 5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3' miRNA: 3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 102997 | 0.73 | 0.550721 |
Target: 5'- gUCGCGGCGUgcGCGGgcgCGG-CGGCgCCCa -3' miRNA: 3'- -GGCGUCGCAa-CGCCa--GUUaGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 116397 | 0.73 | 0.550721 |
Target: 5'- gCCGCGGCG--GCGG-CGcUCugGGCCCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUuAG--UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 8581 | 0.73 | 0.570873 |
Target: 5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3' miRNA: 3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 16117 | 0.73 | 0.550721 |
Target: 5'- cCCaCAGCGUgcgccccaccUGCGGgucugCGAUCAGCgCCa -3' miRNA: 3'- -GGcGUCGCA----------ACGCCa----GUUAGUCGgGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 34517 | 0.73 | 0.540727 |
Target: 5'- gCCGCAGCcagGCGGUCGccagGGCCCg -3' miRNA: 3'- -GGCGUCGcaaCGCCAGUuag-UCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 97186 | 0.72 | 0.601409 |
Target: 5'- gCGCuGCGUaGCGGcuugcucgCGAUCAGCgCCg -3' miRNA: 3'- gGCGuCGCAaCGCCa-------GUUAGUCGgGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 104390 | 0.72 | 0.581017 |
Target: 5'- gCUGCAGCGggccGCGGUCuacgcccgcccAGUCGGCCa- -3' miRNA: 3'- -GGCGUCGCaa--CGCCAG-----------UUAGUCGGgg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 60743 | 0.72 | 0.621892 |
Target: 5'- cCCGCGcgcGCGcgGCGGcCGcgCGGUCCCc -3' miRNA: 3'- -GGCGU---CGCaaCGCCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 39773 | 0.72 | 0.611643 |
Target: 5'- -aGcCGGCGgcGCGGUCcgccgcCAGCCCCc -3' miRNA: 3'- ggC-GUCGCaaCGCCAGuua---GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 118978 | 0.72 | 0.621892 |
Target: 5'- uCCGCGGCcaacGggGCGGUCGcccCGGCCUUg -3' miRNA: 3'- -GGCGUCG----CaaCGCCAGUua-GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 83195 | 0.72 | 0.621892 |
Target: 5'- gCCGCGGgGUcgcGCGG-CcGUCGcGCCCCg -3' miRNA: 3'- -GGCGUCgCAa--CGCCaGuUAGU-CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 28403 | 0.72 | 0.621892 |
Target: 5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3' miRNA: 3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 33781 | 0.72 | 0.581017 |
Target: 5'- cCCGCGGCGcaaGCGcGcgCAugCAGCCCCg -3' miRNA: 3'- -GGCGUCGCaa-CGC-Ca-GUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 30115 | 0.72 | 0.591198 |
Target: 5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3' miRNA: 3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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