miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 7118 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 7943 0.66 0.918732
Target:  5'- uUGCAGC-UUGCGG-CG--UAGCCCg -3'
miRNA:   3'- gGCGUCGcAACGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 8581 0.73 0.570873
Target:  5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3'
miRNA:   3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 11058 0.66 0.887336
Target:  5'- gCCGCAGCG--GCGG-CAGUUcaccuGCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAGu----CGGGg -5'
6354 5' -55.7 NC_001847.1 + 13108 0.67 0.850312
Target:  5'- gCCGCcguccuccucGGC--UGCGGccgCGAUCAGCaCCCc -3'
miRNA:   3'- -GGCG----------UCGcaACGCCa--GUUAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 13149 0.67 0.86576
Target:  5'- gCCGCGGCcg-GCGGUUGGgcugcuggCAGCCa- -3'
miRNA:   3'- -GGCGUCGcaaCGCCAGUUa-------GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 13551 0.67 0.880364
Target:  5'- gCCGgGGCGgcGCGGUgGGUUGcauugccaaauGCCCUu -3'
miRNA:   3'- -GGCgUCGCaaCGCCAgUUAGU-----------CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 13931 0.66 0.906878
Target:  5'- cCCGCgacGGCGUcaugcgcgagcUGCGG-Cug-CGGCCCg -3'
miRNA:   3'- -GGCG---UCGCA-----------ACGCCaGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 14155 0.68 0.834068
Target:  5'- gCGCAGCG--GCGGcCGGggCGGCCgCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 14185 0.7 0.70348
Target:  5'- aCGCGGCGcUG-GGUCcgcccacAUCAGCCaCCa -3'
miRNA:   3'- gGCGUCGCaACgCCAGu------UAGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 14201 0.7 0.743104
Target:  5'- -gGCGGCGgggcugGCGGUCAGgcCGGCCg- -3'
miRNA:   3'- ggCGUCGCaa----CGCCAGUUa-GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 14370 0.66 0.906878
Target:  5'- gCCGcCAGCGc-GCGGUCGuagaGGCUCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 14561 0.7 0.70348
Target:  5'- gCCGCAGCGcgggugcugGCGGgCGcgCGGCUCUc -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14603 0.69 0.75279
Target:  5'- gCCGUcuGGCGc-GCGGUCA-UCGGCUCg -3'
miRNA:   3'- -GGCG--UCGCaaCGCCAGUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 14766 0.69 0.75279
Target:  5'- cCCGCGGCGUgguaGCGcagcagcUCGA-CGGUCCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGCc------AGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 14804 0.68 0.817088
Target:  5'- aCCGCAGCG--GCGGagCugcgCGGCgCCCu -3'
miRNA:   3'- -GGCGUCGCaaCGCCa-Guua-GUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 15013 0.66 0.900597
Target:  5'- gCCGCGGUGggGCcGcgCGAgccgCGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCa-GUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 15549 0.67 0.880364
Target:  5'- gCCGguGCGcgcGCGGccgUCGGgccgCGGCCgCCg -3'
miRNA:   3'- -GGCguCGCaa-CGCC---AGUUa---GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 15994 0.72 0.621892
Target:  5'- cCCGCGGCGgccGCGGcgccgacgagcUCGccAUCgacGGCCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC-----------AGU--UAG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16117 0.73 0.550721
Target:  5'- cCCaCAGCGUgcgccccaccUGCGGgucugCGAUCAGCgCCa -3'
miRNA:   3'- -GGcGUCGCA----------ACGCCa----GUUAGUCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.