miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 483 0.68 0.825667
Target:  5'- -aGCAGCGgcgGCGG-CGGggCGGCCgCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 603 0.67 0.850312
Target:  5'- uCCGCGGCcgcuccgcaGCGG-CGcgCGGCCCg -3'
miRNA:   3'- -GGCGUCGcaa------CGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 995 0.68 0.825667
Target:  5'- gCCGCGGCG--GCGG-CAcgC-GCUCCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 1135 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 1256 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 1926 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 2068 0.79 0.279499
Target:  5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2232 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2292 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3237 0.71 0.662887
Target:  5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3'
miRNA:   3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 3754 0.66 0.912924
Target:  5'- gUGCAGCGcuucgucGCcGUCGAgCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-----CGcCAGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 3827 0.68 0.817088
Target:  5'- gCCGCgAGCGUgGCGuuguUCGcgCcGCCCCa -3'
miRNA:   3'- -GGCG-UCGCAaCGCc---AGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 4876 0.67 0.858139
Target:  5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 5051 0.72 0.611643
Target:  5'- cCCaGCccGCGUcGCGGUCGGgcgCGGCCCa -3'
miRNA:   3'- -GG-CGu-CGCAaCGCCAGUUa--GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 5219 0.67 0.858139
Target:  5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5'
6354 5' -55.7 NC_001847.1 + 5476 0.68 0.80834
Target:  5'- uCUGCGGCG--GCGG-CAG-CGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 6292 0.66 0.900597
Target:  5'- -gGCAGCGgaccucgGCGa--GGUCGGCCUCg -3'
miRNA:   3'- ggCGUCGCaa-----CGCcagUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 6456 0.68 0.799432
Target:  5'- gCGaCGGCGUacGUGGcCAggCAGUCCCg -3'
miRNA:   3'- gGC-GUCGCAa-CGCCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 6937 0.7 0.6934
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.