Results 1 - 20 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 483 | 0.68 | 0.825667 |
Target: 5'- -aGCAGCGgcgGCGG-CGGggCGGCCgCg -3' miRNA: 3'- ggCGUCGCaa-CGCCaGUUa-GUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 603 | 0.67 | 0.850312 |
Target: 5'- uCCGCGGCcgcuccgcaGCGG-CGcgCGGCCCg -3' miRNA: 3'- -GGCGUCGcaa------CGCCaGUuaGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 995 | 0.68 | 0.825667 |
Target: 5'- gCCGCGGCG--GCGG-CAcgC-GCUCCa -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUuaGuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 1135 | 0.66 | 0.918732 |
Target: 5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3' miRNA: 3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 1256 | 0.68 | 0.825667 |
Target: 5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3' miRNA: 3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 1926 | 0.75 | 0.454148 |
Target: 5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 2068 | 0.79 | 0.279499 |
Target: 5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3' miRNA: 3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 2232 | 0.66 | 0.906878 |
Target: 5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3' miRNA: 3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 2292 | 0.66 | 0.894081 |
Target: 5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3' miRNA: 3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 3237 | 0.71 | 0.662887 |
Target: 5'- gCCGCGGC-UUGCGGUaCAG-CAGCgagaCCa -3' miRNA: 3'- -GGCGUCGcAACGCCA-GUUaGUCGg---GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 3754 | 0.66 | 0.912924 |
Target: 5'- gUGCAGCGcuucgucGCcGUCGAgCAGCCCg -3' miRNA: 3'- gGCGUCGCaa-----CGcCAGUUaGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 3827 | 0.68 | 0.817088 |
Target: 5'- gCCGCgAGCGUgGCGuuguUCGcgCcGCCCCa -3' miRNA: 3'- -GGCG-UCGCAaCGCc---AGUuaGuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 3899 | 0.66 | 0.887336 |
Target: 5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3' miRNA: 3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 4876 | 0.67 | 0.858139 |
Target: 5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3' miRNA: 3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 5051 | 0.72 | 0.611643 |
Target: 5'- cCCaGCccGCGUcGCGGUCGGgcgCGGCCCa -3' miRNA: 3'- -GG-CGu-CGCAaCGCCAGUUa--GUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 5219 | 0.67 | 0.858139 |
Target: 5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3' miRNA: 3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 5476 | 0.68 | 0.80834 |
Target: 5'- uCUGCGGCG--GCGG-CAG-CGGCCgCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUUaGUCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 6292 | 0.66 | 0.900597 |
Target: 5'- -gGCAGCGgaccucgGCGa--GGUCGGCCUCg -3' miRNA: 3'- ggCGUCGCaa-----CGCcagUUAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 6456 | 0.68 | 0.799432 |
Target: 5'- gCGaCGGCGUacGUGGcCAggCAGUCCCg -3' miRNA: 3'- gGC-GUCGCAa-CGCCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 6937 | 0.7 | 0.6934 |
Target: 5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCUg -3' miRNA: 3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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