Results 1 - 20 of 339 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6354 | 5' | -55.7 | NC_001847.1 | + | 104881 | 0.79 | 0.279499 |
Target: 5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3' miRNA: 3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 118371 | 0.72 | 0.621892 |
Target: 5'- cCCGCcguGCGgcGCGG-CAuucucAUCGGCCUCg -3' miRNA: 3'- -GGCGu--CGCaaCGCCaGU-----UAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 15994 | 0.72 | 0.621892 |
Target: 5'- cCCGCGGCGgccGCGGcgccgacgagcUCGccAUCgacGGCCCCa -3' miRNA: 3'- -GGCGUCGCaa-CGCC-----------AGU--UAG---UCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 103948 | 0.66 | 0.918732 |
Target: 5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3' miRNA: 3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 104739 | 0.75 | 0.454148 |
Target: 5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3' miRNA: 3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 134244 | 0.74 | 0.472776 |
Target: 5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3' miRNA: 3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 27791 | 0.73 | 0.550721 |
Target: 5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3' miRNA: 3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 8581 | 0.73 | 0.570873 |
Target: 5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3' miRNA: 3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 39601 | 0.72 | 0.601409 |
Target: 5'- gCUGCuGCGgcGCGGcCc--CAGCCCCa -3' miRNA: 3'- -GGCGuCGCaaCGCCaGuuaGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 5051 | 0.72 | 0.611643 |
Target: 5'- cCCaGCccGCGUcGCGGUCGGgcgCGGCCCa -3' miRNA: 3'- -GG-CGu-CGCAaCGCCAGUUa--GUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 16215 | 0.72 | 0.608571 |
Target: 5'- aUGCGGCGUUGCagccuccgcgucccGGcC--UCGGCCCCg -3' miRNA: 3'- gGCGUCGCAACG--------------CCaGuuAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 132928 | 0.72 | 0.591198 |
Target: 5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3' miRNA: 3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 19816 | 0.75 | 0.414625 |
Target: 5'- gCgGUGGCGggGCGGcagaaaaagaacaCAGUCAGCCCCu -3' miRNA: 3'- -GgCGUCGCaaCGCCa------------GUUAGUCGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 28294 | 0.72 | 0.611643 |
Target: 5'- aCGCGGCG-UGCgugGGUguGUUAGgCCCCg -3' miRNA: 3'- gGCGUCGCaACG---CCAguUAGUC-GGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 128573 | 0.75 | 0.435925 |
Target: 5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3' miRNA: 3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 116442 | 0.72 | 0.591198 |
Target: 5'- cCCGCGGCGcugGCGGUgAcgCGGgCCg -3' miRNA: 3'- -GGCGUCGCaa-CGCCAgUuaGUCgGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 97100 | 0.72 | 0.611643 |
Target: 5'- gCCGCGGCGgcGCGGUU----GGCCgCg -3' miRNA: 3'- -GGCGUCGCaaCGCCAGuuagUCGGgG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 131216 | 0.72 | 0.621892 |
Target: 5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3' miRNA: 3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 114198 | 0.75 | 0.444984 |
Target: 5'- aCGCAGCauccGCGuGUCAAUCAGCUCa -3' miRNA: 3'- gGCGUCGcaa-CGC-CAGUUAGUCGGGg -5' |
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6354 | 5' | -55.7 | NC_001847.1 | + | 60748 | 0.74 | 0.501416 |
Target: 5'- gCGCGGCGcggugGCGGUUuucCAGCUCCa -3' miRNA: 3'- gGCGUCGCaa---CGCCAGuuaGUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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