miRNA display CGI


Results 1 - 20 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 104881 0.79 0.279499
Target:  5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118371 0.72 0.621892
Target:  5'- cCCGCcguGCGgcGCGG-CAuucucAUCGGCCUCg -3'
miRNA:   3'- -GGCGu--CGCaaCGCCaGU-----UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 15994 0.72 0.621892
Target:  5'- cCCGCGGCGgccGCGGcgccgacgagcUCGccAUCgacGGCCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC-----------AGU--UAG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 103948 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104739 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 134244 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27791 0.73 0.550721
Target:  5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3'
miRNA:   3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 8581 0.73 0.570873
Target:  5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3'
miRNA:   3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 39601 0.72 0.601409
Target:  5'- gCUGCuGCGgcGCGGcCc--CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 5051 0.72 0.611643
Target:  5'- cCCaGCccGCGUcGCGGUCGGgcgCGGCCCa -3'
miRNA:   3'- -GG-CGu-CGCAaCGCCAGUUa--GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 16215 0.72 0.608571
Target:  5'- aUGCGGCGUUGCagccuccgcgucccGGcC--UCGGCCCCg -3'
miRNA:   3'- gGCGUCGCAACG--------------CCaGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132928 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19816 0.75 0.414625
Target:  5'- gCgGUGGCGggGCGGcagaaaaagaacaCAGUCAGCCCCu -3'
miRNA:   3'- -GgCGUCGCaaCGCCa------------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 28294 0.72 0.611643
Target:  5'- aCGCGGCG-UGCgugGGUguGUUAGgCCCCg -3'
miRNA:   3'- gGCGUCGCaACG---CCAguUAGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 128573 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116442 0.72 0.591198
Target:  5'- cCCGCGGCGcugGCGGUgAcgCGGgCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCAgUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 97100 0.72 0.611643
Target:  5'- gCCGCGGCGgcGCGGUU----GGCCgCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCAGuuagUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 131216 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 114198 0.75 0.444984
Target:  5'- aCGCAGCauccGCGuGUCAAUCAGCUCa -3'
miRNA:   3'- gGCGUCGcaa-CGC-CAGUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 60748 0.74 0.501416
Target:  5'- gCGCGGCGcggugGCGGUUuucCAGCUCCa -3'
miRNA:   3'- gGCGUCGCaa---CGCCAGuuaGUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.