miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 99497 0.74 0.491782
Target:  5'- gCCGCcgaGGCGgcGCGGUCcagCgcuGGCCCCa -3'
miRNA:   3'- -GGCG---UCGCaaCGCCAGuuaG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 60748 0.74 0.501416
Target:  5'- gCGCGGCGcggugGCGGUUuucCAGCUCCa -3'
miRNA:   3'- gGCGUCGCaa---CGCCAGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104521 0.73 0.520927
Target:  5'- gCCGCcGCGuUUGCGGcgcugCGcggCGGCCCCg -3'
miRNA:   3'- -GGCGuCGC-AACGCCa----GUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 47059 0.73 0.530793
Target:  5'- gUCGCGGcCGgcGCGGUCGAUgcCAGCCa- -3'
miRNA:   3'- -GGCGUC-GCaaCGCCAGUUA--GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 34517 0.73 0.540727
Target:  5'- gCCGCAGCcagGCGGUCGccagGGCCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 102997 0.73 0.550721
Target:  5'- gUCGCGGCGUgcGCGGgcgCGG-CGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCAa-CGCCa--GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 116397 0.73 0.550721
Target:  5'- gCCGCGGCG--GCGG-CGcUCugGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG--UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16117 0.73 0.550721
Target:  5'- cCCaCAGCGUgcgccccaccUGCGGgucugCGAUCAGCgCCa -3'
miRNA:   3'- -GGcGUCGCA----------ACGCCa----GUUAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 27791 0.73 0.550721
Target:  5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3'
miRNA:   3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 125555 0.73 0.560772
Target:  5'- cCCGCGGC--UGCGGcUCGAUCgcGGCCgCg -3'
miRNA:   3'- -GGCGUCGcaACGCC-AGUUAG--UCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 8581 0.73 0.570873
Target:  5'- -gGCAGCGUgGUGGUUAgccgcgcgagcGUCAGCCgCa -3'
miRNA:   3'- ggCGUCGCAaCGCCAGU-----------UAGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 33781 0.72 0.581017
Target:  5'- cCCGCGGCGcaaGCGcGcgCAugCAGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGC-Ca-GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104390 0.72 0.581017
Target:  5'- gCUGCAGCGggccGCGGUCuacgcccgcccAGUCGGCCa- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCAG-----------UUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 116442 0.72 0.591198
Target:  5'- cCCGCGGCGcugGCGGUgAcgCGGgCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCAgUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 30115 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 132928 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 97186 0.72 0.601409
Target:  5'- gCGCuGCGUaGCGGcuugcucgCGAUCAGCgCCg -3'
miRNA:   3'- gGCGuCGCAaCGCCa-------GUUAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 39601 0.72 0.601409
Target:  5'- gCUGCuGCGgcGCGGcCc--CAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 83506 0.72 0.607547
Target:  5'- gCCGCGGCGcugcgugccuuccUGCGGUCcGUgCGccGCCCCg -3'
miRNA:   3'- -GGCGUCGCa------------ACGCCAGuUA-GU--CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16215 0.72 0.608571
Target:  5'- aUGCGGCGUUGCagccuccgcgucccGGcC--UCGGCCCCg -3'
miRNA:   3'- gGCGUCGCAACG--------------CCaGuuAGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.