miRNA display CGI


Results 21 - 40 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 86386 0.66 0.912924
Target:  5'- gCCGCGGCG--GCGGgCGcgCGGCUg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 3754 0.66 0.912924
Target:  5'- gUGCAGCGcuucgucGCcGUCGAgCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-----CGcCAGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 53308 0.66 0.912924
Target:  5'- gCCGcCAGUGcgGCGGgcgaCAGgacggCGcGCCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa---GUUa----GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36353 0.66 0.912924
Target:  5'- gCCGCGGCGcgcgcacGCGG-CGccgccgCGGCCCg -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUua----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 36393 0.66 0.912924
Target:  5'- aCCGCuAGCGaUGCcccGGcCc--CGGCCCCg -3'
miRNA:   3'- -GGCG-UCGCaACG---CCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 25358 0.66 0.91233
Target:  5'- -gGCGGCGgucGCGG-CGAUCcgcacgaagaacuGGCCCa -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUAG-------------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 115579 0.66 0.91233
Target:  5'- gCCGCGGCGaucGCGGgcgUCGAUCgcgugcggcuuggAGUCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCC---AGUUAG-------------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 66331 0.66 0.911734
Target:  5'- cCUGCGGCGgguggggcGCGGgcgccgccguggCGAUCGuCCCCg -3'
miRNA:   3'- -GGCGUCGCaa------CGCCa-----------GUUAGUcGGGG- -5'
6354 5' -55.7 NC_001847.1 + 105045 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29289 0.66 0.906878
Target:  5'- gCGCGGCGcugGCGG-CAGaggccgCGGCCgCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 79276 0.66 0.906878
Target:  5'- gCGCGGCGaaGCGGUgcCGGUgaaCGGCgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCA--GUUA---GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 13931 0.66 0.906878
Target:  5'- cCCGCgacGGCGUcaugcgcgagcUGCGG-Cug-CGGCCCg -3'
miRNA:   3'- -GGCG---UCGCA-----------ACGCCaGuuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 87297 0.66 0.906878
Target:  5'- cCCGCGGCc--GCGGcCGAUUugcgcgcauuGGCCgCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCaGUUAG----------UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 131607 0.66 0.906878
Target:  5'- gCCGCcGCGcucGCGGccgUAGUCGGCCa- -3'
miRNA:   3'- -GGCGuCGCaa-CGCCa--GUUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 14370 0.66 0.906878
Target:  5'- gCCGcCAGCGc-GCGGUCGuagaGGCUCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 85729 0.66 0.906878
Target:  5'- -gGCugGGCGUUaGCuuGG-CcGUCAGCCCCg -3'
miRNA:   3'- ggCG--UCGCAA-CG--CCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 113931 0.66 0.906878
Target:  5'- -aGCAGCGc-GCGGUCGcggCGGCgUCu -3'
miRNA:   3'- ggCGUCGCaaCGCCAGUua-GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 2232 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37338 0.66 0.906878
Target:  5'- gCGCuGGCG-UGCGGUCAugcggcggGUCgAGCCg- -3'
miRNA:   3'- gGCG-UCGCaACGCCAGU--------UAG-UCGGgg -5'
6354 5' -55.7 NC_001847.1 + 82132 0.66 0.906878
Target:  5'- gCGCAGCGgccGCcG-CuGUCGGCUCCg -3'
miRNA:   3'- gGCGUCGCaa-CGcCaGuUAGUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.