miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 121392 0.66 0.918732
Target:  5'- gCCcauCAGcCGcUGCG--CGAUCAGCCCCa -3'
miRNA:   3'- -GGc--GUC-GCaACGCcaGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 72589 0.66 0.918732
Target:  5'- aCCGCGGcCGcgGCGG-CAGaaggggCAGCCgCu -3'
miRNA:   3'- -GGCGUC-GCaaCGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 62717 0.66 0.918732
Target:  5'- gCGCAuguuccGCGUUGCGGcCGuggCcGUCCCc -3'
miRNA:   3'- gGCGU------CGCAACGCCaGUua-GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 50918 0.66 0.918732
Target:  5'- cCCGCGGCGgccccgGCcGUCAG--GGCCUg -3'
miRNA:   3'- -GGCGUCGCaa----CGcCAGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 1135 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 98981 0.66 0.918732
Target:  5'- gCCGCaAGCGUUGCcugCAGccgcugCAGgCCCg -3'
miRNA:   3'- -GGCG-UCGCAACGccaGUUa-----GUCgGGG- -5'
6354 5' -55.7 NC_001847.1 + 69681 0.66 0.918732
Target:  5'- -gGCAGCGUUgggcGCGGggccggCGcUCGGUCCg -3'
miRNA:   3'- ggCGUCGCAA----CGCCa-----GUuAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 103948 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 46339 0.66 0.918732
Target:  5'- cCCGCGgggccGCGUcgGCGGcaUCGGggGGCUCCu -3'
miRNA:   3'- -GGCGU-----CGCAa-CGCC--AGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 7943 0.66 0.918732
Target:  5'- uUGCAGC-UUGCGG-CG--UAGCCCg -3'
miRNA:   3'- gGCGUCGcAACGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 73456 0.66 0.918732
Target:  5'- -aGCGGCGccucGcCGGUguA-CAGCCCCu -3'
miRNA:   3'- ggCGUCGCaa--C-GCCAguUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116257 0.66 0.918162
Target:  5'- aCGCGGCGcUGCGGacucuggcgccgcUCGGcgaggCAgcguGCCCCg -3'
miRNA:   3'- gGCGUCGCaACGCC-------------AGUUa----GU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 67216 0.66 0.917015
Target:  5'- -aGCGGCGggcgcGCGGUCGAacgccgugagcuguUCcGCCuCCa -3'
miRNA:   3'- ggCGUCGCaa---CGCCAGUU--------------AGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 100806 0.66 0.912924
Target:  5'- gCCGgGGUugccaUUGCGGcCGAccUCGGCCCg -3'
miRNA:   3'- -GGCgUCGc----AACGCCaGUU--AGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 3754 0.66 0.912924
Target:  5'- gUGCAGCGcuucgucGCcGUCGAgCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-----CGcCAGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 30474 0.66 0.912924
Target:  5'- uCUGCAGCGcUG-GGacgCGAUCGGCgcggCCCu -3'
miRNA:   3'- -GGCGUCGCaACgCCa--GUUAGUCG----GGG- -5'
6354 5' -55.7 NC_001847.1 + 53308 0.66 0.912924
Target:  5'- gCCGcCAGUGcgGCGGgcgaCAGgacggCGcGCCCCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCa---GUUa----GU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 105440 0.66 0.912924
Target:  5'- gCCGCAGUcucGCGcccaagCGAUCAGCgCCa -3'
miRNA:   3'- -GGCGUCGcaaCGCca----GUUAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 36393 0.66 0.912924
Target:  5'- aCCGCuAGCGaUGCcccGGcCc--CGGCCCCg -3'
miRNA:   3'- -GGCG-UCGCaACG---CCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 86386 0.66 0.912924
Target:  5'- gCCGCGGCG--GCGGgCGcgCGGCUg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.