miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 16215 0.72 0.608571
Target:  5'- aUGCGGCGUUGCagccuccgcgucccGGcC--UCGGCCCCg -3'
miRNA:   3'- gGCGUCGCAACG--------------CCaGuuAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16636 0.71 0.632149
Target:  5'- gCGCGGCGgcuuUGCcGUCGG--GGCCCCg -3'
miRNA:   3'- gGCGUCGCa---ACGcCAGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 16663 0.71 0.662887
Target:  5'- -gGCGGCGcggGCGcGUCGcgCAGCCUUg -3'
miRNA:   3'- ggCGUCGCaa-CGC-CAGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 17364 0.69 0.771832
Target:  5'- cCCGCAGgGguauUUGUGGau-GUCGGCgCCCa -3'
miRNA:   3'- -GGCGUCgC----AACGCCaguUAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 17532 0.67 0.850312
Target:  5'- aCCGCGGa--UGCGGgucUCAGagAGCCCg -3'
miRNA:   3'- -GGCGUCgcaACGCC---AGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 18950 0.7 0.744077
Target:  5'- gCCGCGGCGUccggGCGG-CGAcgaccagcgcggccgCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa---CGCCaGUUa--------------GUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 19278 0.69 0.781169
Target:  5'- gCGCAGCGUcugUGCGG-CG---GGCCgCCa -3'
miRNA:   3'- gGCGUCGCA---ACGCCaGUuagUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 19336 0.71 0.673095
Target:  5'- gCCGCAGCGcagcgcGCGGagccgCAG-CGGCUCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCa----GUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 19816 0.75 0.414625
Target:  5'- gCgGUGGCGggGCGGcagaaaaagaacaCAGUCAGCCCCu -3'
miRNA:   3'- -GgCGUCGCaaCGCCa------------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 20071 0.68 0.842286
Target:  5'- -aGCGGCGUgGCGGcucccgCGGcgCGGCCCg -3'
miRNA:   3'- ggCGUCGCAaCGCCa-----GUUa-GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 21945 0.69 0.794014
Target:  5'- aCCGCGGCucgcgGCGGcaccggggggggcuuUCGGcggCGGCCCCc -3'
miRNA:   3'- -GGCGUCGcaa--CGCC---------------AGUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 23805 0.66 0.900597
Target:  5'- gCGCGGCGgccaccgaccacugcUcGCGGUCcagcgcgcgcaCGGCCCCg -3'
miRNA:   3'- gGCGUCGC---------------AaCGCCAGuua--------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 25358 0.66 0.91233
Target:  5'- -gGCGGCGgucGCGG-CGAUCcgcacgaagaacuGGCCCa -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUAG-------------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 25760 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 26477 0.66 0.900597
Target:  5'- gCGCGG-GgaGCGGaaacUCGuccgCGGCCCCg -3'
miRNA:   3'- gGCGUCgCaaCGCC----AGUua--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 26554 0.68 0.799432
Target:  5'- gCGC-GCG-UGCGGUgCAGcaaguagcUCAGCCCg -3'
miRNA:   3'- gGCGuCGCaACGCCA-GUU--------AGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 27157 0.68 0.834068
Target:  5'- gCGCAGCc--GCGG-CGGcCAGCCCa -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUUaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 27336 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27442 0.7 0.743104
Target:  5'- uUCGCAGCGgcGCGGg-----GGCCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaguuagUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.