miRNA display CGI


Results 41 - 60 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 118775 0.69 0.790372
Target:  5'- gCGCGGUGUgaGCGG-CAccggCAGCCgCCa -3'
miRNA:   3'- gGCGUCGCAa-CGCCaGUua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 118403 0.7 0.712501
Target:  5'- cUCGuCAGCGUcguggccgucgccUGCGGUC--UCGGCgCCg -3'
miRNA:   3'- -GGC-GUCGCA-------------ACGCCAGuuAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 118371 0.72 0.621892
Target:  5'- cCCGCcguGCGgcGCGG-CAuucucAUCGGCCUCg -3'
miRNA:   3'- -GGCGu--CGCaaCGCCaGU-----UAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118264 0.66 0.894081
Target:  5'- aCGCAGCGgugGUGGUgAuGUCucuccaggAGCCCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCAgU-UAG--------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 116729 0.68 0.80834
Target:  5'- cCCGCGcGCGcUGU--UCGA-CAGCCCCg -3'
miRNA:   3'- -GGCGU-CGCaACGccAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116718 0.7 0.72345
Target:  5'- gCCGCGGCGcacGUGGcCAA--GGCCCUg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116578 0.67 0.858139
Target:  5'- gCGCGGCacacggGcCGGUCAccgAGCCCCg -3'
miRNA:   3'- gGCGUCGcaa---C-GCCAGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116442 0.72 0.591198
Target:  5'- cCCGCGGCGcugGCGGUgAcgCGGgCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCAgUuaGUCgGGg -5'
6354 5' -55.7 NC_001847.1 + 116397 0.73 0.550721
Target:  5'- gCCGCGGCG--GCGG-CGcUCugGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG--UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 116257 0.66 0.918162
Target:  5'- aCGCGGCGcUGCGGacucuggcgccgcUCGGcgaggCAgcguGCCCCg -3'
miRNA:   3'- gGCGUCGCaACGCC-------------AGUUa----GU----CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 115815 0.68 0.799432
Target:  5'- gCCGCGGCGcUUGCG-UUAA-CAGCCa- -3'
miRNA:   3'- -GGCGUCGC-AACGCcAGUUaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 115688 0.66 0.912924
Target:  5'- gCGCGGCGgaGCGG-Cu---GGCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGuuagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 115579 0.66 0.91233
Target:  5'- gCCGCGGCGaucGCGGgcgUCGAUCgcgugcggcuuggAGUCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCC---AGUUAG-------------UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 115343 0.7 0.70348
Target:  5'- gCCGCuGGCGUUGaCGuugacGUCGAcgugCAGCCCUu -3'
miRNA:   3'- -GGCG-UCGCAAC-GC-----CAGUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 114198 0.75 0.444984
Target:  5'- aCGCAGCauccGCGuGUCAAUCAGCUCa -3'
miRNA:   3'- gGCGUCGcaa-CGC-CAGUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 113931 0.66 0.906878
Target:  5'- -aGCAGCGc-GCGGUCGcggCGGCgUCu -3'
miRNA:   3'- ggCGUCGCaaCGCCAGUua-GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 109931 0.68 0.80834
Target:  5'- gCCGCAGCccaccUUGcCGGUCuu---GCCCCc -3'
miRNA:   3'- -GGCGUCGc----AAC-GCCAGuuaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 109750 0.68 0.799432
Target:  5'- cCCGCAGUGcuuccGCGGUCccccUCcGCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCAGuu--AGuCGGGg -5'
6354 5' -55.7 NC_001847.1 + 108032 0.67 0.858139
Target:  5'- gCCGCGGCGgccgGCGGggcgCGcgCGGCa-- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCa---GUuaGUCGggg -5'
6354 5' -55.7 NC_001847.1 + 107689 0.67 0.858139
Target:  5'- -gGCGGCGggcaGCGG-CAG--GGCCCCc -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUUagUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.