miRNA display CGI


Results 21 - 40 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 130764 0.68 0.834068
Target:  5'- gCCGCGGCGcgcgcgcucGCGGUCGcgguggaggCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCAGUua-------GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 130255 0.7 0.743104
Target:  5'- uUCGCAGCGgcGCGGg-----GGCCCUg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaguuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 130149 0.7 0.733321
Target:  5'- gCCGCcGCGcuuugccGCGGcCGccgCAGCCCCa -3'
miRNA:   3'- -GGCGuCGCaa-----CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 128783 0.67 0.86576
Target:  5'- gCCGCAGCGgcuacgcccGCGGcgCGGUU-GCCgCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCa-GUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 128573 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 127351 0.68 0.80834
Target:  5'- gCCGCGGCaGggGCGG-CGG--GGCCCg -3'
miRNA:   3'- -GGCGUCG-CaaCGCCaGUUagUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 125897 1.14 0.001348
Target:  5'- uCCGCAGCGUUGCGGUCAAUCAGCCCCg -3'
miRNA:   3'- -GGCGUCGCAACGCCAGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 125555 0.73 0.560772
Target:  5'- cCCGCGGC--UGCGGcUCGAUCgcGGCCgCg -3'
miRNA:   3'- -GGCGUCGcaACGCC-AGUUAG--UCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 124757 0.68 0.829049
Target:  5'- aCCGCGGCucgcggGCGGcaccggggggggcuuUCGGcggCGGCCCCc -3'
miRNA:   3'- -GGCGUCGcaa---CGCC---------------AGUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 124741 0.69 0.781169
Target:  5'- gCGCGGgGgaggGCcGUCAuaaagCGGCCCCg -3'
miRNA:   3'- gGCGUCgCaa--CGcCAGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 124642 0.66 0.900597
Target:  5'- cCCGCAgcagcGCGggGCcGUCGGggaAGCCCa -3'
miRNA:   3'- -GGCGU-----CGCaaCGcCAGUUag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 124338 0.66 0.900597
Target:  5'- -aGCAGCGc-GCGG-CAGU-AGCCCa -3'
miRNA:   3'- ggCGUCGCaaCGCCaGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 123072 0.66 0.912924
Target:  5'- cCCGCGGCGcuccGCGGcC--UCGGCgUCCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuAGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 121392 0.66 0.918732
Target:  5'- gCCcauCAGcCGcUGCG--CGAUCAGCCCCa -3'
miRNA:   3'- -GGc--GUC-GCaACGCcaGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 121170 0.68 0.829049
Target:  5'- gCCGCGGaCGUgcgcgacaUGCGGgagcggcacuugcgCGGggCGGCCCCc -3'
miRNA:   3'- -GGCGUC-GCA--------ACGCCa-------------GUUa-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 120595 0.71 0.652655
Target:  5'- cCCGCGcuGCGgcGCGGUCAuacucCAGCCg- -3'
miRNA:   3'- -GGCGU--CGCaaCGCCAGUua---GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 120234 0.7 0.731354
Target:  5'- aUCGCGGCGagGCaGUCGGccugcgcgcggaCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGcCAGUUa-----------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 120116 0.75 0.426973
Target:  5'- cUCGCccGGCGgccGCGGcUCGcgCGGCCCCa -3'
miRNA:   3'- -GGCG--UCGCaa-CGCC-AGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 119655 0.69 0.781169
Target:  5'- -gGCAGCcggGCGGgagggCAAcggCGGCCCCc -3'
miRNA:   3'- ggCGUCGcaaCGCCa----GUUa--GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 118978 0.72 0.621892
Target:  5'- uCCGCGGCcaacGggGCGGUCGcccCGGCCUUg -3'
miRNA:   3'- -GGCGUCG----CaaCGCCAGUua-GUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.