miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 27519 0.66 0.900597
Target:  5'- gCCGCGGCGgcgGCGGggac---GCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaguuaguCGGGg -5'
6354 5' -55.7 NC_001847.1 + 27791 0.73 0.550721
Target:  5'- gCGCGGCGggUGCGGgcucuggcCAuUCGcGCCCCg -3'
miRNA:   3'- gGCGUCGCa-ACGCCa-------GUuAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 27951 0.68 0.834068
Target:  5'- gCCGCGGCGcgcgcgcucGCGGUCGcgguggaggCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCAGUua-------GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 28236 0.66 0.887336
Target:  5'- aUGCAGCGcgugGUGGUgGAgUgGGCCUCg -3'
miRNA:   3'- gGCGUCGCaa--CGCCAgUU-AgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 28294 0.72 0.611643
Target:  5'- aCGCGGCG-UGCgugGGUguGUUAGgCCCCg -3'
miRNA:   3'- gGCGUCGCaACG---CCAguUAGUC-GGGG- -5'
6354 5' -55.7 NC_001847.1 + 28403 0.72 0.621892
Target:  5'- gCCGCGGCGccagcGCGGgcgcgCAAcCGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa----GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 29225 0.69 0.781169
Target:  5'- gCCGCGGCGggccGCGGcCugcCGGCCgCg -3'
miRNA:   3'- -GGCGUCGCaa--CGCCaGuuaGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 29289 0.66 0.906878
Target:  5'- gCGCGGCGcugGCGG-CAGaggccgCGGCCgCg -3'
miRNA:   3'- gGCGUCGCaa-CGCCaGUUa-----GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 29331 0.7 0.733321
Target:  5'- aCGCGGUGgagcgcgcGCGGcuccagCGcgCGGCCCCg -3'
miRNA:   3'- gGCGUCGCaa------CGCCa-----GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29366 0.66 0.887336
Target:  5'- nCgGCGGCGcUGCGcGcCGAggCGGCCgCCg -3'
miRNA:   3'- -GgCGUCGCaACGC-CaGUUa-GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 29408 0.69 0.781169
Target:  5'- gCCGCgcuGGCGgcGCGGaCcg-UGGCCCCg -3'
miRNA:   3'- -GGCG---UCGCaaCGCCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 29455 0.7 0.6934
Target:  5'- gCGCGGCGcgGCGGcCcgcgcGUCGGCCUg -3'
miRNA:   3'- gGCGUCGCaaCGCCaGu----UAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 29528 0.66 0.887336
Target:  5'- gCGCGGCug-GCGGcCGcgcucgCGGCCCUg -3'
miRNA:   3'- gGCGUCGcaaCGCCaGUua----GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30115 0.72 0.591198
Target:  5'- gCCGCGGCGcugGCGGcCuacugCcGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGuua--GuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30474 0.66 0.912924
Target:  5'- uCUGCAGCGcUG-GGacgCGAUCGGCgcggCCCu -3'
miRNA:   3'- -GGCGUCGCaACgCCa--GUUAGUCG----GGG- -5'
6354 5' -55.7 NC_001847.1 + 30566 0.68 0.837378
Target:  5'- uCCGCGGCGUcuggGacgaGGUCcagGAggaccgccgcguagCGGCCCCg -3'
miRNA:   3'- -GGCGUCGCAa---Cg---CCAG---UUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 30613 0.67 0.87317
Target:  5'- gCCGCGGCGcggcgGCGGcUGAUCGuGCUCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCaGUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 30723 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 31227 0.68 0.834068
Target:  5'- gCCGCGGCGgcgccgcccGCGGcCg--CGGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa-------CGCCaGuuaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 31431 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.