miRNA display CGI


Results 61 - 80 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 113931 0.66 0.906878
Target:  5'- -aGCAGCGc-GCGGUCGcggCGGCgUCu -3'
miRNA:   3'- ggCGUCGCaaCGCCAGUua-GUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 85729 0.66 0.906878
Target:  5'- -gGCugGGCGUUaGCuuGG-CcGUCAGCCCCg -3'
miRNA:   3'- ggCG--UCGCAA-CG--CCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58382 0.66 0.894081
Target:  5'- cUCGUAGCGggugccgGCGGgCAG-CAGCUCUu -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2292 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 3899 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 99017 0.66 0.887336
Target:  5'- uCCGCGGCGcgcGCGGcuUCGuggaaGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCaa-CGCC--AGUuag--UCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 90741 0.66 0.887336
Target:  5'- cUCGCGGCGc-GUGGcCG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 79677 0.66 0.887336
Target:  5'- -gGCAGCGgcuagcGCGG-CGcgC-GCCCCg -3'
miRNA:   3'- ggCGUCGCaa----CGCCaGUuaGuCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 74140 0.66 0.887336
Target:  5'- gCGCGGCGccgaugGCGGccUCGA-CGGCgCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCC--AGUUaGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 30723 0.66 0.887336
Target:  5'- gCCGCGGCGcagUGCGccgCGcgCuGGCCCg -3'
miRNA:   3'- -GGCGUCGCa--ACGCca-GUuaG-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 100759 0.66 0.894081
Target:  5'- gCCGCGGCG--GCGGcCGccguuguuUCGGCCgCa -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUu-------AGUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 56097 0.66 0.894081
Target:  5'- gCGCcGCGUUaaGCGcGUCGAUguGCCa- -3'
miRNA:   3'- gGCGuCGCAA--CGC-CAGUUAguCGGgg -5'
6354 5' -55.7 NC_001847.1 + 14370 0.66 0.906878
Target:  5'- gCCGcCAGCGc-GCGGUCGuagaGGCUCg -3'
miRNA:   3'- -GGC-GUCGCaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 124642 0.66 0.900597
Target:  5'- cCCGCAgcagcGCGggGCcGUCGGggaAGCCCa -3'
miRNA:   3'- -GGCGU-----CGCaaCGcCAGUUag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 56141 0.66 0.900597
Target:  5'- gCGCAGCcuccGggGUGGcUCAG-CAGCCgCCc -3'
miRNA:   3'- gGCGUCG----CaaCGCC-AGUUaGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 48520 0.66 0.900597
Target:  5'- aCGCAGaCGUUGUGGcccgccUCGAggCGcGCCCg -3'
miRNA:   3'- gGCGUC-GCAACGCC------AGUUa-GU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 131923 0.66 0.900597
Target:  5'- gCCGCGGCGgcGCGGaggCAcgU-GCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCa--GUuaGuCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 124338 0.66 0.900597
Target:  5'- -aGCAGCGc-GCGG-CAGU-AGCCCa -3'
miRNA:   3'- ggCGUCGCaaCGCCaGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 18347 0.66 0.900597
Target:  5'- gCGCAGUc--GCGGUCGcccaagaucGUCGGCgggCCCg -3'
miRNA:   3'- gGCGUCGcaaCGCCAGU---------UAGUCG---GGG- -5'
6354 5' -55.7 NC_001847.1 + 45132 0.66 0.899312
Target:  5'- gUGCAGCucggcgccuucUGCGGggug-CAGCCCCg -3'
miRNA:   3'- gGCGUCGca---------ACGCCaguuaGUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.