miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 125897 1.14 0.001348
Target:  5'- uCCGCAGCGUUGCGGUCAAUCAGCCCCg -3'
miRNA:   3'- -GGCGUCGCAACGCCAGUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 61045 0.8 0.236376
Target:  5'- aCCgGCAGCGguacGCGGcC-AUCAGCCCCa -3'
miRNA:   3'- -GG-CGUCGCaa--CGCCaGuUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104881 0.79 0.279499
Target:  5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 2068 0.79 0.279499
Target:  5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36881 0.78 0.306837
Target:  5'- aCCGCGGCGUUcCGGUCccaccCAGCCuCCa -3'
miRNA:   3'- -GGCGUCGCAAcGCCAGuua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 61454 0.78 0.321255
Target:  5'- gCGCGGCGagGCGGUCGcgCAGCagcgCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCAGUuaGUCGg---GG- -5'
6354 5' -55.7 NC_001847.1 + 38076 0.78 0.321255
Target:  5'- gCGCGGCGgccgccGCGGUCGGggaaagCAGCCCg -3'
miRNA:   3'- gGCGUCGCaa----CGCCAGUUa-----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 54536 0.75 0.421654
Target:  5'- aCCGCGGCGgggGCGGgggcggggaagacgCAGUCGcGCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCa-------------GUUAGU-CGGGg -5'
6354 5' -55.7 NC_001847.1 + 104739 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 1926 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 120116 0.75 0.426973
Target:  5'- cUCGCccGGCGgccGCGGcUCGcgCGGCCCCa -3'
miRNA:   3'- -GGCG--UCGCaa-CGCC-AGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 128573 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 114198 0.75 0.444984
Target:  5'- aCGCAGCauccGCGuGUCAAUCAGCUCa -3'
miRNA:   3'- gGCGUCGcaa-CGC-CAGUUAGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 19816 0.75 0.414625
Target:  5'- gCgGUGGCGggGCGGcagaaaaagaacaCAGUCAGCCCCu -3'
miRNA:   3'- -GgCGUCGCaaCGCCa------------GUUAGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 25760 0.75 0.435925
Target:  5'- gCCGCGGCGaguaauUUGCGGUUAgaacagGUCGcGCCCUc -3'
miRNA:   3'- -GGCGUCGC------AACGCCAGU------UAGU-CGGGG- -5'
6354 5' -55.7 NC_001847.1 + 31431 0.74 0.472776
Target:  5'- -gGCGGCGgccgGCGGcCGcggCGGCCCCg -3'
miRNA:   3'- ggCGUCGCaa--CGCCaGUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 58005 0.74 0.488908
Target:  5'- gCGCAgGCGgcgGCGGUCGcgcgcgcgccuugaAgCAGCCCCg -3'
miRNA:   3'- gGCGU-CGCaa-CGCCAGU--------------UaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 99497 0.74 0.491782
Target:  5'- gCCGCcgaGGCGgcGCGGUCcagCgcuGGCCCCa -3'
miRNA:   3'- -GGCG---UCGCaaCGCCAGuuaG---UCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 56750 0.74 0.491782
Target:  5'- cCCGCAGCGgcGgGGUCc-UCGGCCa- -3'
miRNA:   3'- -GGCGUCGCaaCgCCAGuuAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 64253 0.74 0.482234
Target:  5'- gCCGCgaguAGCGguccgcagGCGGUUuGUaCAGCCCCa -3'
miRNA:   3'- -GGCG----UCGCaa------CGCCAGuUA-GUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.