miRNA display CGI


Results 81 - 100 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 31961 0.71 0.662887
Target:  5'- gCCGCGGCG--GCGG-CG---GGCCCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 31963 0.68 0.80834
Target:  5'- gCGCGGCGc-GCGGggCG---GGCCCCg -3'
miRNA:   3'- gGCGUCGCaaCGCCa-GUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 32133 0.67 0.880364
Target:  5'- gCGCcgggGGCGgggGCGGgggCGGg-GGCCCCg -3'
miRNA:   3'- gGCG----UCGCaa-CGCCa--GUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 32334 0.71 0.632149
Target:  5'- gCGCGGCGcggcGCGGagGGggccCAGCCCCc -3'
miRNA:   3'- gGCGUCGCaa--CGCCagUUa---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 33333 0.69 0.771832
Target:  5'- -gGCGGCGcgcUGCGuGaCGGUgGGCCCCu -3'
miRNA:   3'- ggCGUCGCa--ACGC-CaGUUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 33494 0.66 0.912924
Target:  5'- uCCGCGGCGgcggcGCGGgcggCGGcgGGCgCCg -3'
miRNA:   3'- -GGCGUCGCaa---CGCCa---GUUagUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 33701 0.67 0.880364
Target:  5'- cUCGCGGCGcgGCGG-CGcgUGGCCg- -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuaGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 33781 0.72 0.581017
Target:  5'- cCCGCGGCGcaaGCGcGcgCAugCAGCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGC-Ca-GUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 34009 0.7 0.732338
Target:  5'- uUCGCGGCGgUGCugggcaccgcgcuGGgccaggCGAUgGGCCCCg -3'
miRNA:   3'- -GGCGUCGCaACG-------------CCa-----GUUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 34131 0.68 0.80834
Target:  5'- gCCGCGGCG--GCGG-CAGUaacuGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUAgu--CGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 34517 0.73 0.540727
Target:  5'- gCCGCAGCcagGCGGUCGccagGGCCCg -3'
miRNA:   3'- -GGCGUCGcaaCGCCAGUuag-UCGGGg -5'
6354 5' -55.7 NC_001847.1 + 35295 0.67 0.88318
Target:  5'- aCGguGCGUggGCGGgggcgggCAAcgcaaagcacuaagCGGCCCCc -3'
miRNA:   3'- gGCguCGCAa-CGCCa------GUUa-------------GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36353 0.66 0.912924
Target:  5'- gCCGCGGCGcgcgcacGCGG-CGccgccgCGGCCCg -3'
miRNA:   3'- -GGCGUCGCaa-----CGCCaGUua----GUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 36393 0.66 0.912924
Target:  5'- aCCGCuAGCGaUGCcccGGcCc--CGGCCCCg -3'
miRNA:   3'- -GGCG-UCGCaACG---CCaGuuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 36701 0.68 0.799432
Target:  5'- -aGCGGCGUgguggagGCGGcuUCGGUC-GCCgCCg -3'
miRNA:   3'- ggCGUCGCAa------CGCC--AGUUAGuCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 36881 0.78 0.306837
Target:  5'- aCCGCGGCGUUcCGGUCccaccCAGCCuCCa -3'
miRNA:   3'- -GGCGUCGCAAcGCCAGuua--GUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 37147 0.7 0.710501
Target:  5'- aCCGaGGCGcuuacgagccgagugGCGGUCAA-CAGCCUCg -3'
miRNA:   3'- -GGCgUCGCaa-------------CGCCAGUUaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37338 0.66 0.906878
Target:  5'- gCGCuGGCG-UGCGGUCAugcggcggGUCgAGCCg- -3'
miRNA:   3'- gGCG-UCGCaACGCCAGU--------UAG-UCGGgg -5'
6354 5' -55.7 NC_001847.1 + 37357 0.66 0.900597
Target:  5'- aCCGUGGCGgagcugGCGcGUC--UCAuCCCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGC-CAGuuAGUcGGGG- -5'
6354 5' -55.7 NC_001847.1 + 37585 0.68 0.799432
Target:  5'- gCCGCuGCGgcugcgGCGGcCGGgggcCGGCCCg -3'
miRNA:   3'- -GGCGuCGCaa----CGCCaGUUa---GUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.