miRNA display CGI


Results 61 - 80 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 27622 0.66 0.655143
Target:  5'- cGGCCauCGUuccucguCCGCUCggcaCUCGCGCu -3'
miRNA:   3'- uCCGGgcGCAu------GGCGAGaa--GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 27060 0.66 0.655143
Target:  5'- gAGGCCCGCagccccCCGggCggCaCCGCGCc -3'
miRNA:   3'- -UCCGGGCGcau---GGCgaGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 63273 0.66 0.655143
Target:  5'- cGGGCCgCGCGcucgcgGCCGCUUccaCCGCu- -3'
miRNA:   3'- -UCCGG-GCGCa-----UGGCGAGaagGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 72540 0.66 0.655143
Target:  5'- cGGcGCCCGUGcACgCGCUCUuugCCUGCcCg -3'
miRNA:   3'- -UC-CGGGCGCaUG-GCGAGAa--GGGCGcG- -5'
6356 3' -61.4 NC_001847.1 + 71065 0.66 0.655143
Target:  5'- uGGaCCCG-GUGCuggcggCGCUCggCCgGCGCg -3'
miRNA:   3'- uCC-GGGCgCAUG------GCGAGaaGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 90450 0.66 0.655143
Target:  5'- uGGGCUCuC-UACCGCUCc-CCCGUGUu -3'
miRNA:   3'- -UCCGGGcGcAUGGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 62015 0.66 0.655143
Target:  5'- gGGGCCCuGCG-GCCGUaugCggcUCCCgGCGUu -3'
miRNA:   3'- -UCCGGG-CGCaUGGCGa--Ga--AGGG-CGCG- -5'
6356 3' -61.4 NC_001847.1 + 114404 0.66 0.655143
Target:  5'- gAGGCCCGCcucACCGCcggUCUgUCCGacgGCg -3'
miRNA:   3'- -UCCGGGCGca-UGGCG---AGAaGGGCg--CG- -5'
6356 3' -61.4 NC_001847.1 + 129999 0.66 0.655143
Target:  5'- uGGCCCGCacacccCUGCuUCUUCUacaagaGCGCg -3'
miRNA:   3'- uCCGGGCGcau---GGCG-AGAAGGg-----CGCG- -5'
6356 3' -61.4 NC_001847.1 + 10174 0.66 0.655143
Target:  5'- cGGCCCGCuGcGCCgGCUUU-UgCGCGCc -3'
miRNA:   3'- uCCGGGCG-CaUGG-CGAGAaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 17942 0.66 0.655143
Target:  5'- cAGGCaugaucgcagUCGUGUGCCGCg---CuuGCGCu -3'
miRNA:   3'- -UCCG----------GGCGCAUGGCGagaaGggCGCG- -5'
6356 3' -61.4 NC_001847.1 + 55861 0.66 0.655143
Target:  5'- cGGCgCCGUucaccgGcACCGCUUcgCCCGCGg -3'
miRNA:   3'- uCCG-GGCG------CaUGGCGAGaaGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 65750 0.66 0.655143
Target:  5'- cGGGCCCGCaaagGCCGCcggcagCgccaCCGcCGCa -3'
miRNA:   3'- -UCCGGGCGca--UGGCGa-----Gaag-GGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 112987 0.66 0.655143
Target:  5'- cGGCCCGCuGcGCCgGCUUU-UgCGCGCc -3'
miRNA:   3'- uCCGGGCG-CaUGG-CGAGAaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 61260 0.66 0.655143
Target:  5'- -cGUCCGCGU-CCGCgg--CgCGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGagaaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70891 0.66 0.655143
Target:  5'- -cGCCUGCGgACCGCUa--CUCGCGg -3'
miRNA:   3'- ucCGGGCGCaUGGCGAgaaGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 91163 0.66 0.654154
Target:  5'- uGGCCaCGCGcGCCuuauauagauccaGCUCguccgcgUCgCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGG-------------CGAGa------AGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 74628 0.66 0.649207
Target:  5'- cGGUgCCGCGgccauaaaaaggcCCGC-CggCCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCau-----------GGCGaGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 57859 0.66 0.647227
Target:  5'- cGGGCCUGuCGggucGCCGCcgucgcacgagggugUCgcccgccagcgCCCGCGCg -3'
miRNA:   3'- -UCCGGGC-GCa---UGGCG---------------AGaa---------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 129790 0.66 0.645247
Target:  5'- uGGGCCCG---GCCGCg----CCGCGCg -3'
miRNA:   3'- -UCCGGGCgcaUGGCGagaagGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.