miRNA display CGI


Results 41 - 60 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 15204 0.66 0.665023
Target:  5'- cGGaCCCGC--ACCGCg---CCgGCGCg -3'
miRNA:   3'- uCC-GGGCGcaUGGCGagaaGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 108253 0.66 0.665023
Target:  5'- cAGGCCaugaucCGC-UGCCGCgcgUUCCCGCa- -3'
miRNA:   3'- -UCCGG------GCGcAUGGCGag-AAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 78365 0.66 0.665023
Target:  5'- -aGCCCcucgaGCGUGCCGUUCgag-CGCGCc -3'
miRNA:   3'- ucCGGG-----CGCAUGGCGAGaaggGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 101627 0.66 0.665023
Target:  5'- cGGCgccuCCGCGgcggcgcccGCCGCcg--CCCGCGCc -3'
miRNA:   3'- uCCG----GGCGCa--------UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 123838 0.66 0.665023
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 59711 0.66 0.665023
Target:  5'- cAGGaCuCCGCGgucgcgauCgCGCUCggcgUCCgGCGCg -3'
miRNA:   3'- -UCC-G-GGCGCau------G-GCGAGa---AGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 65909 0.66 0.665023
Target:  5'- uAGGCCaGCGuUGCCGCggcgCCgGCGa -3'
miRNA:   3'- -UCCGGgCGC-AUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 60015 0.66 0.665023
Target:  5'- cGGCCCcgGCGggGCCcggGC-CUUCUCGgGCa -3'
miRNA:   3'- uCCGGG--CGCa-UGG---CGaGAAGGGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 32035 0.66 0.665023
Target:  5'- gGGGCgCGgGgACgGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGgCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10213 0.66 0.665023
Target:  5'- cGGGCCCaggGCGcgcCCGCUgUcgCCCccgGCGCg -3'
miRNA:   3'- -UCCGGG---CGCau-GGCGAgAa-GGG---CGCG- -5'
6356 3' -61.4 NC_001847.1 + 66919 0.66 0.665023
Target:  5'- cGuGCuuGCGgccccGCCGCgg--CCCGUGCg -3'
miRNA:   3'- uC-CGggCGCa----UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 130067 0.66 0.665023
Target:  5'- cGGCgaCGCGUcGCCGUcCUgggCCGCGCc -3'
miRNA:   3'- uCCGg-GCGCA-UGGCGaGAag-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 120210 0.66 0.665023
Target:  5'- cGGcGCCCGCucgcagccuuguGUAUCGCggcgaggcagUCggCCUGCGCg -3'
miRNA:   3'- -UC-CGGGCG------------CAUGGCG----------AGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 31108 0.66 0.665023
Target:  5'- uGGCCUGCGggcgGCgCGCgCUggagCUgGCGCc -3'
miRNA:   3'- uCCGGGCGCa---UG-GCGaGAa---GGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 109413 0.66 0.664036
Target:  5'- -cGCCCGCc-GCCGCUucucgucCUUCUCGgGCc -3'
miRNA:   3'- ucCGGGCGcaUGGCGA-------GAAGGGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 54923 0.66 0.659097
Target:  5'- uGGCCCGCGUugacgcACCaGUUCUUCgaccuaguuaacgggCCGCu- -3'
miRNA:   3'- uCCGGGCGCA------UGG-CGAGAAG---------------GGCGcg -5'
6356 3' -61.4 NC_001847.1 + 100753 0.66 0.655143
Target:  5'- gGGGCCgGgGU-CCaGgUCgcCCCGCGCc -3'
miRNA:   3'- -UCCGGgCgCAuGG-CgAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70891 0.66 0.655143
Target:  5'- -cGCCUGCGgACCGCUa--CUCGCGg -3'
miRNA:   3'- ucCGGGCGCaUGGCGAgaaGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 72540 0.66 0.655143
Target:  5'- cGGcGCCCGUGcACgCGCUCUuugCCUGCcCg -3'
miRNA:   3'- -UC-CGGGCGCaUG-GCGAGAa--GGGCGcG- -5'
6356 3' -61.4 NC_001847.1 + 112987 0.66 0.655143
Target:  5'- cGGCCCGCuGcGCCgGCUUU-UgCGCGCc -3'
miRNA:   3'- uCCGGGCG-CaUGG-CGAGAaGgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.