miRNA display CGI


Results 41 - 60 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 88818 0.73 0.271529
Target:  5'- cGGCCCGCGggcgGCCGUgCUgcgCUCgGCGCu -3'
miRNA:   3'- uCCGGGCGCa---UGGCGaGAa--GGG-CGCG- -5'
6356 3' -61.4 NC_001847.1 + 39389 0.74 0.230772
Target:  5'- cGGCCCGCGccgccccCCGCgccagagCggCCCGCGCc -3'
miRNA:   3'- uCCGGGCGCau-----GGCGa------GaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132970 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 43139 0.73 0.271529
Target:  5'- cGGGCCCGCGggcGCUGCg---CCCGCa- -3'
miRNA:   3'- -UCCGGGCGCa--UGGCGagaaGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 49746 0.79 0.1132
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132801 0.71 0.354476
Target:  5'- cGGGCCgGCGcggcgggaGCCGCcgCUgcccgCCCGCGUg -3'
miRNA:   3'- -UCCGGgCGCa-------UGGCGa-GAa----GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 946 0.78 0.145529
Target:  5'- cGGCCCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGGGCGCa--UGGCGAGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 106730 0.71 0.346923
Target:  5'- cGGGCgCCG-GUugCGCg---CCCGCGCu -3'
miRNA:   3'- -UCCG-GGCgCAugGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 47872 0.72 0.339486
Target:  5'- cGGGCgCGCGcAgCGCgcgCgcgCCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCaUgGCGa--Gaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 36990 0.72 0.322114
Target:  5'- cGGGCCCGCGccgagcggcggcgGCgCGCUCgagcugacgCCCGCGg -3'
miRNA:   3'- -UCCGGGCGCa------------UG-GCGAGaa-------GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 134185 0.72 0.304052
Target:  5'- cGGCCCGgGUGCCgGCgcagucgUCCCcggGCGCg -3'
miRNA:   3'- uCCGGGCgCAUGG-CGaga----AGGG---CGCG- -5'
6356 3' -61.4 NC_001847.1 + 87858 0.73 0.296648
Target:  5'- uGGCCCGCGgGCCuguggucGCUgUggCCGCGCg -3'
miRNA:   3'- uCCGGGCGCaUGG-------CGAgAagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132879 0.73 0.275908
Target:  5'- cGGCuuccgCCGCGUGCCGCcCggggacuaccacacgCCCGCGCc -3'
miRNA:   3'- uCCG-----GGCGCAUGGCGaGaa-------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 14143 0.73 0.262938
Target:  5'- gGGGCCCGCGccugggcgGCCGCUagggcgacggCCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGAgaag------GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 62148 0.74 0.247571
Target:  5'- -cGCCCGCGcUGCgGCcagC-UCCCGCGCg -3'
miRNA:   3'- ucCGGGCGC-AUGgCGa--GaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 39497 0.74 0.241862
Target:  5'- cGGCCCGC--GCCGCcc--CCCGCGCc -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 81165 0.74 0.236262
Target:  5'- uGGCCCGcCGcGCCGCUCggagggCUCGCGg -3'
miRNA:   3'- uCCGGGC-GCaUGGCGAGaa----GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 32119 0.75 0.223267
Target:  5'- cGGCCCGCccGCCGCcggcgCUgggcgccgccgcgCCCGCGCa -3'
miRNA:   3'- uCCGGGCGcaUGGCGa----GAa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 73145 0.75 0.204427
Target:  5'- aGGGCCC-CGcGCCGCUCUUcgggcccauuaugCCCGcCGCg -3'
miRNA:   3'- -UCCGGGcGCaUGGCGAGAA-------------GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 28315 0.76 0.194827
Target:  5'- uAGGCCCcgacccuGCGUGCCGCUCg-CCgGCGg -3'
miRNA:   3'- -UCCGGG-------CGCAUGGCGAGaaGGgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.