miRNA display CGI


Results 41 - 60 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 8219 0.7 0.427512
Target:  5'- uGGCCCGaGUGCgaGCcCUgggaCCCGCGCc -3'
miRNA:   3'- uCCGGGCgCAUGg-CGaGAa---GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 8245 0.68 0.546893
Target:  5'- uGGCCUGCGgcaGCaacgaGCggUUCCUGCGUg -3'
miRNA:   3'- uCCGGGCGCa--UGg----CGagAAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 8958 0.7 0.444915
Target:  5'- gAGGaugCCGCGgucGCCGCUCaUCuuGCGg -3'
miRNA:   3'- -UCCg--GGCGCa--UGGCGAGaAGggCGCg -5'
6356 3' -61.4 NC_001847.1 + 9640 0.66 0.670939
Target:  5'- -cGCCgGCccGCCGCUCgagcagccgggcgUCCuCGCGCc -3'
miRNA:   3'- ucCGGgCGcaUGGCGAGa------------AGG-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 9766 0.71 0.343935
Target:  5'- gGGcGCCCGCuUACCGCUCcuccucuucucugUCCCGCc- -3'
miRNA:   3'- -UC-CGGGCGcAUGGCGAGa------------AGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 9875 0.66 0.635341
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 9916 0.66 0.644257
Target:  5'- cGGGCCCcgcccccGCGgacgaGCaCGCUCgccgcggCCCGgGCg -3'
miRNA:   3'- -UCCGGG-------CGCa----UG-GCGAGaa-----GGGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 10039 0.66 0.671924
Target:  5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10174 0.66 0.655143
Target:  5'- cGGCCCGCuGcGCCgGCUUU-UgCGCGCc -3'
miRNA:   3'- uCCGGGCG-CaUGG-CGAGAaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10213 0.66 0.665023
Target:  5'- cGGGCCCaggGCGcgcCCGCUgUcgCCCccgGCGCg -3'
miRNA:   3'- -UCCGGG---CGCau-GGCGAgAa-GGG---CGCG- -5'
6356 3' -61.4 NC_001847.1 + 10386 0.67 0.605636
Target:  5'- -cGCUCGCGgcgggGCCGCUUUaugacggcccgUCCCcCGCg -3'
miRNA:   3'- ucCGGGCGCa----UGGCGAGA-----------AGGGcGCG- -5'
6356 3' -61.4 NC_001847.1 + 10394 0.68 0.54786
Target:  5'- -cGCCCGCGaGCCGCgguccucuccuccgcCUcgCCCGCGg -3'
miRNA:   3'- ucCGGGCGCaUGGCGa--------------GAa-GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 10427 0.72 0.304052
Target:  5'- cGGUUCGCGcUGCCGCc---CCCGCGCc -3'
miRNA:   3'- uCCGGGCGC-AUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10540 0.68 0.53726
Target:  5'- cGGGCCCGgGgacCCGCgccCggCCgGCGCn -3'
miRNA:   3'- -UCCGGGCgCau-GGCGa--GaaGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10570 0.71 0.38583
Target:  5'- cGGGCCCgGCGccgGCgGC-CccCCCGCGCg -3'
miRNA:   3'- -UCCGGG-CGCa--UGgCGaGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10613 0.67 0.619489
Target:  5'- cGGCCCGCGcccUGCUggcgcugguccuccgGCUCcUCgCCGgGCu -3'
miRNA:   3'- uCCGGGCGC---AUGG---------------CGAGaAG-GGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 10680 0.69 0.471743
Target:  5'- gGGGCUCGCccuCCGgUCgcgCCCGgGCg -3'
miRNA:   3'- -UCCGGGCGcauGGCgAGaa-GGGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 10740 0.66 0.635341
Target:  5'- uGGCCgGCGUACaggCGCaUUUUCUggcagagcugCGCGCg -3'
miRNA:   3'- uCCGGgCGCAUG---GCG-AGAAGG----------GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10751 0.69 0.499367
Target:  5'- gGGGcCCCGCGgcCCcCUCU-CCCGCc- -3'
miRNA:   3'- -UCC-GGGCGCauGGcGAGAaGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 10809 0.66 0.674877
Target:  5'- uGGGCuacugCCGCGcGCUGCUgcagcaCCUGCGCg -3'
miRNA:   3'- -UCCG-----GGCGCaUGGCGAgaa---GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.