miRNA display CGI


Results 21 - 40 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 2988 0.67 0.605636
Target:  5'- gGGGCCgGCGcuggaGCCGCgcgcgCUcCaCCGCGUc -3'
miRNA:   3'- -UCCGGgCGCa----UGGCGa----GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3102 0.68 0.546893
Target:  5'- cGGCCgGCagGCCGCgg--CCCGcCGCg -3'
miRNA:   3'- uCCGGgCGcaUGGCGagaaGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 3215 0.75 0.220114
Target:  5'- -aGCUCGCGcaGCCGCUCgcgcgccgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCa-UGGCGAGaa------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3592 0.68 0.518176
Target:  5'- cGGGCCCGCGaGCuucgCGCUCUgcagccaggCCauggcgucgcggCGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG----GCGAGAa--------GG------------GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3659 0.74 0.247571
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3711 0.67 0.576098
Target:  5'- cGGGcCCCGCGgccGCCGCg--UagCGCGCg -3'
miRNA:   3'- -UCC-GGGCGCa--UGGCGagaAggGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3917 0.71 0.346923
Target:  5'- cGGGCgCCG-GUugCGCg---CCCGCGCu -3'
miRNA:   3'- -UCCG-GGCgCAugGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 4016 0.66 0.632368
Target:  5'- cGGGCCCggcgcccgccucucGCGggGCCGCUUUgguucuggUCCCG-GCc -3'
miRNA:   3'- -UCCGGG--------------CGCa-UGGCGAGA--------AGGGCgCG- -5'
6356 3' -61.4 NC_001847.1 + 4184 0.66 0.625432
Target:  5'- uGGGCCgCGCGc-CCGUggg-CCgCGCGCa -3'
miRNA:   3'- -UCCGG-GCGCauGGCGagaaGG-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 4559 0.67 0.605636
Target:  5'- cGGCgCCGuCGUccucGCUGCUCU--CCGCGUc -3'
miRNA:   3'- uCCG-GGC-GCA----UGGCGAGAagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 4634 0.67 0.564367
Target:  5'- cGGCCCGCc-GgCGCUCgcgcgccucagCCCGaCGCg -3'
miRNA:   3'- uCCGGGCGcaUgGCGAGaa---------GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 4892 0.67 0.619489
Target:  5'- aGGGCCCcCGcGCCGCUgCgaacgacaccgaCCGCGCc -3'
miRNA:   3'- -UCCGGGcGCaUGGCGA-Gaag---------GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 4925 0.71 0.362144
Target:  5'- aGGGCC-----GCCGCgCUUCCCGCGCc -3'
miRNA:   3'- -UCCGGgcgcaUGGCGaGAAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 5618 0.74 0.241862
Target:  5'- cGGGCgUGgGcGCCGCgg-UCCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGGCGagaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 5796 0.68 0.556581
Target:  5'- cGGGCCCG-GcACCGCg---CuuGCGCu -3'
miRNA:   3'- -UCCGGGCgCaUGGCGagaaGggCGCG- -5'
6356 3' -61.4 NC_001847.1 + 5856 0.67 0.595763
Target:  5'- cAGGCCCGCcccUACCaGUUCcccuccccaUUCCCGCc- -3'
miRNA:   3'- -UCCGGGCGc--AUGG-CGAG---------AAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 7202 0.69 0.499367
Target:  5'- uAGGCagCCGCGgccgccgcCCGCUCUcuucUCuCUGCGCu -3'
miRNA:   3'- -UCCG--GGCGCau------GGCGAGA----AG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 7453 0.7 0.418962
Target:  5'- cGGCCCGCacccuuuuuggGUGCCGUUa-UUuuGCGCg -3'
miRNA:   3'- uCCGGGCG-----------CAUGGCGAgaAGggCGCG- -5'
6356 3' -61.4 NC_001847.1 + 7906 0.75 0.200057
Target:  5'- gGGGCgCGCGgcgGCCGCcgcuUCUUCCCcCGCc -3'
miRNA:   3'- -UCCGgGCGCa--UGGCG----AGAAGGGcGCG- -5'
6356 3' -61.4 NC_001847.1 + 8041 0.68 0.527686
Target:  5'- -aGCCCG-GUggacccaaaGCCGCgCggCCCGCGCg -3'
miRNA:   3'- ucCGGGCgCA---------UGGCGaGaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.