miRNA display CGI


Results 21 - 40 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 39497 0.74 0.241862
Target:  5'- cGGCCCGC--GCCGCcc--CCCGCGCc -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 81165 0.74 0.236262
Target:  5'- uGGCCCGcCGcGCCGCUCggagggCUCGCGg -3'
miRNA:   3'- uCCGGGC-GCaUGGCGAGaa----GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 7906 0.75 0.200057
Target:  5'- gGGGCgCGCGgcgGCCGCcgcuUCUUCCCcCGCc -3'
miRNA:   3'- -UCCGgGCGCa--UGGCG----AGAAGGGcGCG- -5'
6356 3' -61.4 NC_001847.1 + 16464 0.78 0.142304
Target:  5'- gAGGCCCGCGgcgcagagcgcggacACCuCUCUugcgccUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa--------------UGGcGAGA------AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132052 0.73 0.271529
Target:  5'- cGGCCUGCcgGCCGCgg--CCUGCGCg -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 16366 0.74 0.253392
Target:  5'- cGGCugCCG-GUGCCGCUCacaCCGCGCg -3'
miRNA:   3'- uCCG--GGCgCAUGGCGAGaagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 39389 0.74 0.230772
Target:  5'- cGGCCCGCGccgccccCCGCgccagagCggCCCGCGCc -3'
miRNA:   3'- uCCGGGCGCau-----GGCGa------GaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132970 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 62148 0.74 0.247571
Target:  5'- -cGCCCGCGcUGCgGCcagC-UCCCGCGCg -3'
miRNA:   3'- ucCGGGCGC-AUGgCGa--GaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 49746 0.79 0.1132
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 39443 0.74 0.230772
Target:  5'- cGGCCCGCGccgccccCCGCgccagagCggCCCGCGCc -3'
miRNA:   3'- uCCGGGCGCau-----GGCGa------GaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 46775 0.74 0.247571
Target:  5'- gGGGCCgGUccGCCGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGGgCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32119 0.75 0.223267
Target:  5'- cGGCCCGCccGCCGCcggcgCUgggcgccgccgcgCCCGCGCa -3'
miRNA:   3'- uCCGGGCGcaUGGCGa----GAa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 73145 0.75 0.204427
Target:  5'- aGGGCCC-CGcGCCGCUCUUcgggcccauuaugCCCGcCGCg -3'
miRNA:   3'- -UCCGGGcGCaUGGCGAGAA-------------GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 28315 0.76 0.194827
Target:  5'- uAGGCCCcgacccuGCGUGCCGCUCg-CCgGCGg -3'
miRNA:   3'- -UCCGGG-------CGCAUGGCGAGaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 946 0.78 0.145529
Target:  5'- cGGCCCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGGGCGCa--UGGCGAGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 87858 0.73 0.296648
Target:  5'- uGGCCCGCGgGCCuguggucGCUgUggCCGCGCg -3'
miRNA:   3'- uCCGGGCGCaUGG-------CGAgAagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132879 0.73 0.275908
Target:  5'- cGGCuuccgCCGCGUGCCGCcCggggacuaccacacgCCCGCGCc -3'
miRNA:   3'- uCCG-----GGCGCAUGGCGaGaa-------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 74271 0.73 0.26537
Target:  5'- gGGGCCCGCGcGCgCGCUCgcgcuggCCUcggcggGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa-----GGG------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 24525 0.74 0.259324
Target:  5'- gGGGCUCGCGcGCUGCacgaUUUCCGUGCa -3'
miRNA:   3'- -UCCGGGCGCaUGGCGag--AAGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.