miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 32835 0.8 0.099674
Target:  5'- gAGGCCCGCGUggccgccgagACCGCggcgCUCGCGCg -3'
miRNA:   3'- -UCCGGGCGCA----------UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 39389 0.74 0.230772
Target:  5'- cGGCCCGCGccgccccCCGCgccagagCggCCCGCGCc -3'
miRNA:   3'- uCCGGGCGCau-----GGCGa------GaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 81165 0.74 0.236262
Target:  5'- uGGCCCGcCGcGCCGCUCggagggCUCGCGg -3'
miRNA:   3'- uCCGGGC-GCaUGGCGAGaa----GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 32510 0.65 0.680774
Target:  5'- gGGGCuggCCGCGUACaCGCggCUgucggaggcgaugCgCGCGCa -3'
miRNA:   3'- -UCCG---GGCGCAUG-GCGa-GAa------------GgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 946 0.78 0.145529
Target:  5'- cGGCCCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGGGCGCa--UGGCGAGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 103080 0.77 0.168778
Target:  5'- gGGGCCCGagccCGgggGCCGC-CgagCCCGCGCg -3'
miRNA:   3'- -UCCGGGC----GCa--UGGCGaGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 28315 0.76 0.194827
Target:  5'- uAGGCCCcgacccuGCGUGCCGCUCg-CCgGCGg -3'
miRNA:   3'- -UCCGGG-------CGCAUGGCGAGaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 92181 0.76 0.195298
Target:  5'- cGGCCgGCGgcCCGCcCccCCCGCGCg -3'
miRNA:   3'- uCCGGgCGCauGGCGaGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 73145 0.75 0.204427
Target:  5'- aGGGCCC-CGcGCCGCUCUUcgggcccauuaugCCCGcCGCg -3'
miRNA:   3'- -UCCGGGcGCaUGGCGAGAA-------------GGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 22815 0.74 0.230772
Target:  5'- cGGGCCgGCGgcgGCCGCUC--CCCGC-Cg -3'
miRNA:   3'- -UCCGGgCGCa--UGGCGAGaaGGGCGcG- -5'
6356 3' -61.4 NC_001847.1 + 106028 0.75 0.220114
Target:  5'- -aGCUCGCGcaGCCGCUCgcgcgccgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCa-UGGCGAGaa------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 7906 0.75 0.200057
Target:  5'- gGGGCgCGCGgcgGCCGCcgcuUCUUCCCcCGCc -3'
miRNA:   3'- -UCCGgGCGCa--UGGCG----AGAAGGGcGCG- -5'
6356 3' -61.4 NC_001847.1 + 49746 0.79 0.1132
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32119 0.75 0.223267
Target:  5'- cGGCCCGCccGCCGCcggcgCUgggcgccgccgcgCCCGCGCa -3'
miRNA:   3'- uCCGGGCGcaUGGCGa----GAa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132970 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 133724 0.76 0.195298
Target:  5'- uGGGCCCGCc-ACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 93775 0.74 0.230772
Target:  5'- cGGCCCGgccGCCGCUUggcuggUUCCGCGCg -3'
miRNA:   3'- uCCGGGCgcaUGGCGAGa-----AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 39443 0.74 0.230772
Target:  5'- cGGCCCGCGccgccccCCGCgccagagCggCCCGCGCc -3'
miRNA:   3'- uCCGGGCGCau-----GGCGa------GaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 16464 0.78 0.142304
Target:  5'- gAGGCCCGCGgcgcagagcgcggacACCuCUCUugcgccUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa--------------UGGcGAGA------AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 87294 0.76 0.190638
Target:  5'- cGGCCCGCG-GCCGCggccgaUUUgCGCGCa -3'
miRNA:   3'- uCCGGGCGCaUGGCGag----AAGgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.