miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 124364 1.11 0.000612
Target:  5'- cAGGCCCGCGUACCGCUCUUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCAUGGCGAGAAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 30911 0.83 0.065961
Target:  5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32835 0.8 0.099674
Target:  5'- gAGGCCCGCGUggccgccgagACCGCggcgCUCGCGCg -3'
miRNA:   3'- -UCCGGGCGCA----------UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 52072 0.79 0.110365
Target:  5'- uGGCugCCGUGUugCGCUCUUCggCCGCGCc -3'
miRNA:   3'- uCCG--GGCGCAugGCGAGAAG--GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 49746 0.79 0.1132
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132970 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 30157 0.78 0.128427
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 99007 0.78 0.138452
Target:  5'- cAGGCCCGCGU-CCGCgg--CgCGCGCg -3'
miRNA:   3'- -UCCGGGCGCAuGGCGagaaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 16464 0.78 0.142304
Target:  5'- gAGGCCCGCGgcgcagagcgcggacACCuCUCUugcgccUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa--------------UGGcGAGA------AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 946 0.78 0.145529
Target:  5'- cGGCCCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGGGCGCa--UGGCGAGaaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 38225 0.77 0.16068
Target:  5'- cGGGCCgCGCGccucuacgcgGCCGCcagUCCCGCGCg -3'
miRNA:   3'- -UCCGG-GCGCa---------UGGCGagaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 103080 0.77 0.168778
Target:  5'- gGGGCCCGagccCGgggGCCGC-CgagCCCGCGCg -3'
miRNA:   3'- -UCCGGGC----GCa--UGGCGaGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 105785 0.77 0.168778
Target:  5'- -cGCCCGCGgucGCCGCUgUUuucaacggccgCCCGCGCa -3'
miRNA:   3'- ucCGGGCGCa--UGGCGAgAA-----------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 132553 0.77 0.168778
Target:  5'- cGGGCUCGCGUgcggccgcggcgGCCGCgcaggcgCCCGCGCc -3'
miRNA:   3'- -UCCGGGCGCA------------UGGCGagaa---GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 267 0.77 0.168778
Target:  5'- gGGGCCCGagccCGgggGCCGC-CgagCCCGCGCg -3'
miRNA:   3'- -UCCGGGC----GCa--UGGCGaGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 57558 0.76 0.18161
Target:  5'- cGGGUgCCGcCGUGCgaGCUCggCCCGCGCg -3'
miRNA:   3'- -UCCG-GGC-GCAUGg-CGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 91608 0.76 0.186076
Target:  5'- cGGCgCCGUGUugGCCGCgaggaagCCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA--UGGCGagaa---GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 87294 0.76 0.190638
Target:  5'- cGGCCCGCG-GCCGCggccgaUUUgCGCGCa -3'
miRNA:   3'- uCCGGGCGCaUGGCGag----AAGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 71723 0.76 0.190638
Target:  5'- cGGCCCGCcggcGCCGCgugCgcUCCCGUGCg -3'
miRNA:   3'- uCCGGGCGca--UGGCGa--Ga-AGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 28315 0.76 0.194827
Target:  5'- uAGGCCCcgacccuGCGUGCCGCUCg-CCgGCGg -3'
miRNA:   3'- -UCCGGG-------CGCAUGGCGAGaaGGgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.