miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 32510 0.65 0.680774
Target:  5'- gGGGCuggCCGCGUACaCGCggCUgucggaggcgaugCgCGCGCa -3'
miRNA:   3'- -UCCG---GGCGCAUG-GCGa-GAa------------GgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70904 0.66 0.673893
Target:  5'- aGGGCCCGcCGUGgccucccCCGCcaUCU-CuaGCGCg -3'
miRNA:   3'- -UCCGGGC-GCAU-------GGCG--AGAaGggCGCG- -5'
6356 3' -61.4 NC_001847.1 + 66639 0.66 0.671924
Target:  5'- cGGCgggggCGCGUuuguggacugccugGCgCGCUUgcgCCCGCGCg -3'
miRNA:   3'- uCCGg----GCGCA--------------UG-GCGAGaa-GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 10039 0.66 0.671924
Target:  5'- cGGCuCCGCGUucgucacggccgacACgCGCgcgCUgCgCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA--------------UG-GCGa--GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 58061 0.66 0.668968
Target:  5'- cGGGCCgccgauuggcgcgcgCGCGcGCCGCagCgggUgCCGCGCc -3'
miRNA:   3'- -UCCGG---------------GCGCaUGGCGa-Ga--AgGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 70714 0.66 0.666009
Target:  5'- gGGcGCCCGCGgcgagcgcgaggacaGCCGCUgccaauagCgCCGCGCa -3'
miRNA:   3'- -UC-CGGGCGCa--------------UGGCGAgaa-----G-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 59711 0.66 0.665023
Target:  5'- cAGGaCuCCGCGgucgcgauCgCGCUCggcgUCCgGCGCg -3'
miRNA:   3'- -UCC-G-GGCGCau------G-GCGAGa---AGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 123838 0.66 0.665023
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 101627 0.66 0.665023
Target:  5'- cGGCgccuCCGCGgcggcgcccGCCGCcg--CCCGCGCc -3'
miRNA:   3'- uCCG----GGCGCa--------UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 116495 0.66 0.673893
Target:  5'- cGGGCaCgGCGUcgcgcucGCCGagcacCUCUgCCUGCGCu -3'
miRNA:   3'- -UCCG-GgCGCA-------UGGC-----GAGAaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 27456 0.66 0.674877
Target:  5'- gGGGCCC---UGCCGCUg--CCCGcCGCc -3'
miRNA:   3'- -UCCGGGcgcAUGGCGAgaaGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 75528 0.66 0.674877
Target:  5'- cGGgCgGCGU-CUGCauugcgCUUCCCGuCGCg -3'
miRNA:   3'- uCCgGgCGCAuGGCGa-----GAAGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 37109 0.66 0.674877
Target:  5'- cGGCCCGCugGUGuucaUGCUCUggggCGCGCa -3'
miRNA:   3'- uCCGGGCG--CAUg---GCGAGAagg-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32711 0.66 0.674877
Target:  5'- -uGCCCGCuGUGCaagGCg---CCCGUGCa -3'
miRNA:   3'- ucCGGGCG-CAUGg--CGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 128072 0.66 0.674877
Target:  5'- uGGCCCGg--GCgGCUCg--CCGCGUg -3'
miRNA:   3'- uCCGGGCgcaUGgCGAGaagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 102164 0.66 0.674877
Target:  5'- cGGCCCGCcgcaagcucaGCCGCcaagUCggccaCCGCGCu -3'
miRNA:   3'- uCCGGGCGca--------UGGCG----AGaag--GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 51676 0.66 0.674877
Target:  5'- cAGGgCgGCGUACgCGCgcgCcgUCgCGCGCc -3'
miRNA:   3'- -UCCgGgCGCAUG-GCGa--Ga-AGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32269 0.66 0.674877
Target:  5'- cGGGCCCGcCGcGCCGaaaUUUCCGCc- -3'
miRNA:   3'- -UCCGGGC-GCaUGGCgagAAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 31328 0.66 0.674877
Target:  5'- cGGCCugguggagCGCGUGCCGCcg--CCgGCGg -3'
miRNA:   3'- uCCGG--------GCGCAUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 2926 0.66 0.674877
Target:  5'- cGGUCCGCGccgccagcgcgGCCGC-C-UCCaGCGCg -3'
miRNA:   3'- uCCGGGCGCa----------UGGCGaGaAGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.