miRNA display CGI


Results 41 - 60 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 39497 0.74 0.241862
Target:  5'- cGGCCCGC--GCCGCcc--CCCGCGCc -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 33650 0.74 0.241862
Target:  5'- gAGGCgCGCGcgcgcgugGCCGCgg--CCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa-------UGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 41857 0.74 0.242428
Target:  5'- cGGCCUGCGcGCCGCcgacaUCgcggcgcgauacggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCaUGGCG-----AGaa------------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 46775 0.74 0.247571
Target:  5'- gGGGCCgGUccGCCGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGGgCGcaUGGCGagaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 62148 0.74 0.247571
Target:  5'- -cGCCCGCGcUGCgGCcagC-UCCCGCGCg -3'
miRNA:   3'- ucCGGGCGC-AUGgCGa--GaAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 106472 0.74 0.247571
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 3659 0.74 0.247571
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 33240 0.74 0.247571
Target:  5'- cGGGCgCCGCGgcgccuccgcUGCCGCgg-UCCgCGCGCa -3'
miRNA:   3'- -UCCG-GGCGC----------AUGGCGagaAGG-GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 52908 0.74 0.247571
Target:  5'- uAGGUCCGCGggcaGCgGCUCggggcgCCCGCGa -3'
miRNA:   3'- -UCCGGGCGCa---UGgCGAGaa----GGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 18699 0.74 0.247571
Target:  5'- cGGCCCGCGUcACCGC-CagCgCCGCGg -3'
miRNA:   3'- uCCGGGCGCA-UGGCGaGaaG-GGCGCg -5'
6356 3' -61.4 NC_001847.1 + 41984 0.74 0.253392
Target:  5'- gGGGCgUCGCG-GCCGCcUUUCCCGCGg -3'
miRNA:   3'- -UCCG-GGCGCaUGGCGaGAAGGGCGCg -5'
6356 3' -61.4 NC_001847.1 + 107299 0.74 0.253392
Target:  5'- aGGGCCCGCacggggucuCCGCUCaugUCagCCGCGCg -3'
miRNA:   3'- -UCCGGGCGcau------GGCGAGa--AG--GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 40915 0.74 0.253392
Target:  5'- cGGCCCGCGcgggcgccccGCCGCgagCUcCgCCGCGCg -3'
miRNA:   3'- uCCGGGCGCa---------UGGCGa--GAaG-GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 16366 0.74 0.253392
Target:  5'- cGGCugCCG-GUGCCGCUCacaCCGCGCg -3'
miRNA:   3'- uCCG--GGCgCAUGGCGAGaagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 93325 0.74 0.253392
Target:  5'- uGGGaCCCGC--GCCGC-CcgCCCGCGCg -3'
miRNA:   3'- -UCC-GGGCGcaUGGCGaGaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 24525 0.74 0.259324
Target:  5'- gGGGCUCGCGcGCUGCacgaUUUCCGUGCa -3'
miRNA:   3'- -UCCGGGCGCaUGGCGag--AAGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 14143 0.73 0.262938
Target:  5'- gGGGCCCGCGccugggcgGCCGCUagggcgacggCCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGAgaag------GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 74271 0.73 0.26537
Target:  5'- gGGGCCCGCGcGCgCGCUCgcgcuggCCUcggcggGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa-----GGG------CGCG- -5'
6356 3' -61.4 NC_001847.1 + 31570 0.73 0.26537
Target:  5'- aGGGCCCucuacGCGUACCuaGCUCUgCgCGCGUg -3'
miRNA:   3'- -UCCGGG-----CGCAUGG--CGAGAaGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 29239 0.73 0.271529
Target:  5'- cGGCCUGCcgGCCGCgg--CCUGCGCg -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.