miRNA display CGI


Results 21 - 40 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 3941 0.75 0.386751
Target:  5'- cAGCGGgcGGCGAGCGCGaCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCUUGUGC-GGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 74678 0.75 0.386751
Target:  5'- cGGCGccauGGCGGACGCGCCCgacgggggcaGCGCCg- -3'
miRNA:   3'- -UCGCu---UUGCUUGUGCGGGa---------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 74644 0.75 0.40387
Target:  5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3'
miRNA:   3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 78647 0.75 0.378373
Target:  5'- uGGCGgcGCGGucGCGCGCgCCUGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 40973 0.75 0.370117
Target:  5'- cGCGAGGCGGcCGCGCCCaGCaGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGCGGGaCG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 43093 0.75 0.39525
Target:  5'- cGGCG--GCGGAgGCGCCCggagGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUgUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 53265 0.75 0.370117
Target:  5'- cGGCGggGCGcuGCGCGCCCagGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCu-UGUGCGGGa-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 36096 0.75 0.386751
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 49994 0.74 0.430427
Target:  5'- cGCGAGAgGAgcccGCGCGCCCacCGCCUGc -3'
miRNA:   3'- uCGCUUUgCU----UGUGCGGGacGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 36977 0.74 0.457981
Target:  5'- gGGCGccGGCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCu-UUGCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 134070 0.74 0.457981
Target:  5'- aGGCGGggagcAGCGAACA-GCCCgGCGCCg- -3'
miRNA:   3'- -UCGCU-----UUGCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 14811 0.74 0.44869
Target:  5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 54592 0.74 0.457981
Target:  5'- gGGCGGcgcuGGCGGcGCGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU----UUGCU-UGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 72967 0.73 0.505889
Target:  5'- cGCGGAuuggggacGCGGACGCGCCC-GCGCg-- -3'
miRNA:   3'- uCGCUU--------UGCUUGUGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 57667 0.73 0.48645
Target:  5'- cGGCGGGcCGGGCcggGCGCCCgGCGCCc- -3'
miRNA:   3'- -UCGCUUuGCUUG---UGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 9929 0.73 0.465487
Target:  5'- cGCG-GACGAGCACGCUCgccgcggcccggGCGCCUu -3'
miRNA:   3'- uCGCuUUGCUUGUGCGGGa-----------CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 56263 0.73 0.476865
Target:  5'- uGCGu-ACGAccaccACACGCCCgGCGCCa- -3'
miRNA:   3'- uCGCuuUGCU-----UGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132081 0.73 0.476865
Target:  5'- uGCacuACGAGCACaaCCUGCGCCUGc -3'
miRNA:   3'- uCGcuuUGCUUGUGcgGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 48249 0.73 0.467374
Target:  5'- gAGCG-AGCGGAUGCGCCCgaGCGaCUGg -3'
miRNA:   3'- -UCGCuUUGCUUGUGCGGGa-CGCgGAC- -5'
6357 3' -56.1 NC_001847.1 + 129027 0.73 0.467374
Target:  5'- cGGCGAGGCGcuCGCGCC--GCGCCUc -3'
miRNA:   3'- -UCGCUUUGCuuGUGCGGgaCGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.