Results 21 - 40 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 85881 | 0.73 | 0.496126 |
Target: 5'- cGCGGAccugaGCGAGCGCGUUCgccgGCGCCa- -3' miRNA: 3'- uCGCUU-----UGCUUGUGCGGGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 131128 | 0.73 | 0.496126 |
Target: 5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3' miRNA: 3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 78647 | 0.75 | 0.378373 |
Target: 5'- uGGCGgcGCGGucGCGCGCgCCUGCGUCg- -3' miRNA: 3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 12038 | 0.82 | 0.142928 |
Target: 5'- cGGCGGAGCGcuGgACGCCCUGCGCgCUGc -3' miRNA: 3'- -UCGCUUUGCu-UgUGCGGGACGCG-GAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 24090 | 0.72 | 0.555816 |
Target: 5'- cAGCGAGAgGAcCACGCCCUcGUaGCCg- -3' miRNA: 3'- -UCGCUUUgCUuGUGCGGGA-CG-CGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 67291 | 0.72 | 0.535643 |
Target: 5'- cGCGucGCGAGCGCGCgCgccaGCGCCg- -3' miRNA: 3'- uCGCuuUGCUUGUGCGgGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54592 | 0.74 | 0.457981 |
Target: 5'- gGGCGGcgcuGGCGGcGCGCGCCC-GCGCCg- -3' miRNA: 3'- -UCGCU----UUGCU-UGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 77986 | 0.83 | 0.125399 |
Target: 5'- uGGCGGgcGGCGAGCGCGCCCUGCuGUUUGa -3' miRNA: 3'- -UCGCU--UUGCUUGUGCGGGACG-CGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 54354 | 0.72 | 0.525652 |
Target: 5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3' miRNA: 3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 124927 | 0.85 | 0.093637 |
Target: 5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3' miRNA: 3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 78930 | 0.73 | 0.48645 |
Target: 5'- uGGaCGAAGCccuGCugGCCCUGUGCCc- -3' miRNA: 3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 61895 | 0.73 | 0.505889 |
Target: 5'- cGCGcacggccuCGAGCGCGCCC-GCGCCg- -3' miRNA: 3'- uCGCuuu-----GCUUGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 74644 | 0.75 | 0.40387 |
Target: 5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3' miRNA: 3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 3941 | 0.75 | 0.386751 |
Target: 5'- cAGCGGgcGGCGAGCGCGaCCCacaGCGCCa- -3' miRNA: 3'- -UCGCU--UUGCUUGUGC-GGGa--CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 64023 | 0.76 | 0.338344 |
Target: 5'- cGGCGGGACGGGCuuGCCCgcgguucaCGCCUGg -3' miRNA: 3'- -UCGCUUUGCUUGugCGGGac------GCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 58793 | 0.8 | 0.199378 |
Target: 5'- cGGCaGGAACGGACAgCGCCUgcgccgGCGCCUGg -3' miRNA: 3'- -UCG-CUUUGCUUGU-GCGGGa-----CGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 112514 | 0.72 | 0.555816 |
Target: 5'- cGCccucccCGGACGCGCCCUGCGCg-- -3' miRNA: 3'- uCGcuuu--GCUUGUGCGGGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 34308 | 0.72 | 0.555816 |
Target: 5'- cAGCGAGGCuucGGGCGCG-CUUGCGUCUGc -3' miRNA: 3'- -UCGCUUUG---CUUGUGCgGGACGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 80097 | 0.72 | 0.545699 |
Target: 5'- cGCGcGACGAACGCGgccaCCUGCGCa-- -3' miRNA: 3'- uCGCuUUGCUUGUGCg---GGACGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 104602 | 0.72 | 0.535643 |
Target: 5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3' miRNA: 3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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