miRNA display CGI


Results 1 - 20 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 6903 0.85 0.09116
Target:  5'- cGGCGAGcGCGcGCGCGCCCUGCGCgCUGu -3'
miRNA:   3'- -UCGCUU-UGCuUGUGCGGGACGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 54592 0.74 0.457981
Target:  5'- gGGCGGcgcuGGCGGcGCGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU----UUGCU-UGUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131128 0.73 0.496126
Target:  5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 79968 0.66 0.886176
Target:  5'- uGGaaAAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 58793 0.8 0.199378
Target:  5'- cGGCaGGAACGGACAgCGCCUgcgccgGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCUUGU-GCGGGa-----CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 94252 0.78 0.267799
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 64023 0.76 0.338344
Target:  5'- cGGCGGGACGGGCuuGCCCgcgguucaCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGugCGGGac------GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 122820 0.76 0.338344
Target:  5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3'
miRNA:   3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 3941 0.75 0.386751
Target:  5'- cAGCGGgcGGCGAGCGCGaCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCUUGUGC-GGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 36977 0.74 0.457981
Target:  5'- gGGCGccGGCGAGCGgGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCu-UUGCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 43093 0.75 0.39525
Target:  5'- cGGCG--GCGGAgGCGCCCggagGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUgUGCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 78647 0.75 0.378373
Target:  5'- uGGCGgcGCGGucGCGCGCgCCUGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 124927 0.85 0.093637
Target:  5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 74644 0.75 0.40387
Target:  5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3'
miRNA:   3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 77986 0.83 0.125399
Target:  5'- uGGCGGgcGGCGAGCGCGCCCUGCuGUUUGa -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCGGGACG-CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 53265 0.75 0.370117
Target:  5'- cGGCGggGCGcuGCGCGCCCagGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCu-UGUGCGGGa-CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 14811 0.74 0.44869
Target:  5'- cGGCGGAGCuGcGCgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUG-CuUG-UGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 78930 0.73 0.48645
Target:  5'- uGGaCGAAGCccuGCugGCCCUGUGCCc- -3'
miRNA:   3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 12038 0.82 0.142928
Target:  5'- cGGCGGAGCGcuGgACGCCCUGCGCgCUGc -3'
miRNA:   3'- -UCGCUUUGCu-UgUGCGGGACGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 30141 0.78 0.274284
Target:  5'- cGCGAcGCGcGGCGCGCCgUGCGcCCUGg -3'
miRNA:   3'- uCGCUuUGC-UUGUGCGGgACGC-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.