miRNA display CGI


Results 1 - 20 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 606 0.65 0.890992
Target:  5'- uGCccGACG-ACGCGCCCcguguaccaccacaUGCGCCg- -3'
miRNA:   3'- uCGcuUUGCuUGUGCGGG--------------ACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 1335 0.67 0.832124
Target:  5'- gAGCcccAGCGc-CGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGcu-UUGCuuGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 1413 0.69 0.699829
Target:  5'- cGGCGgcACGGGCACcgcggugcgcggGCCCagGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUG------------CGGGa-CGCGgAC- -5'
6357 3' -56.1 NC_001847.1 + 1532 0.68 0.749734
Target:  5'- cGGCGcgcGCGAAgGCGCCCgggccgaagacGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUgUGCGGGa----------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 1556 0.69 0.730022
Target:  5'- cGCccgccCGAuaGCGCGCCC-GCGCCUGu -3'
miRNA:   3'- uCGcuuu-GCU--UGUGCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 1567 0.67 0.848604
Target:  5'- cGCGAGgccagcACGGcGCGCGCCagcGCGCCg- -3'
miRNA:   3'- uCGCUU------UGCU-UGUGCGGga-CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 1789 0.72 0.535643
Target:  5'- cGCGu--CGAgagcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuuGCU--------UGUGCGGGACGCGgac -5'
6357 3' -56.1 NC_001847.1 + 2385 0.67 0.814021
Target:  5'- cGCGAAgacgGCGGugACGCGCUcggccguggcucgCUGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCU--UGUGCGG-------------GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 2840 0.67 0.839636
Target:  5'- cGGCGGgcugaacAGCGcGCGCGCCa-GCGCCc- -3'
miRNA:   3'- -UCGCU-------UUGCuUGUGCGGgaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3031 0.69 0.720031
Target:  5'- gGGCGGucACGucuGCGCGCCCaGCaGCCg- -3'
miRNA:   3'- -UCGCUu-UGCu--UGUGCGGGaCG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 3159 0.7 0.638114
Target:  5'- cGGCGcgGCGGGC-CGCCUccaGCGCCUc -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGa--CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 3310 0.67 0.823601
Target:  5'- gAGCGcgGCGcGgGCGCCgCUGcCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGG-GAC-GCGGac -5'
6357 3' -56.1 NC_001847.1 + 3409 0.7 0.658797
Target:  5'- cAGCGGGA-GAGCA-GCCCggggGCGCCa- -3'
miRNA:   3'- -UCGCUUUgCUUGUgCGGGa---CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3455 0.67 0.840461
Target:  5'- aGGCGGAAguCGAcagcaaGCGCGCgCCggcGCGCCg- -3'
miRNA:   3'- -UCGCUUU--GCU------UGUGCG-GGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3890 0.68 0.769023
Target:  5'- cAGCGGAGCGAGCcguuGCGCgCggugGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCUUG----UGCGgGa---CGCGgac -5'
6357 3' -56.1 NC_001847.1 + 3912 0.7 0.638114
Target:  5'- cAGCGcGGGCGccgguuGCGCGCCCgcgcugGCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCu-----UGUGCGGGa-----CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 3941 0.75 0.386751
Target:  5'- cAGCGGgcGGCGAGCGCGaCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCUUGUGC-GGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 4006 0.69 0.709964
Target:  5'- cGCGggGCGc-CGgGCCCgGCGCCc- -3'
miRNA:   3'- uCGCuuUGCuuGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 4165 0.68 0.782233
Target:  5'- cAGCG-AGCGGgccuuguuuugggccGCGCGCCCgUGgGCCg- -3'
miRNA:   3'- -UCGCuUUGCU---------------UGUGCGGG-ACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 4278 0.7 0.638114
Target:  5'- uGGCGGccACGAgGCGCGCgCCgGCGCCUu -3'
miRNA:   3'- -UCGCUu-UGCU-UGUGCG-GGaCGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.