miRNA display CGI


Results 1 - 20 of 464 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 135061 0.7 0.66911
Target:  5'- gGGCGGAGCccaGAGCGgGCCCgggcccgccGCGCCg- -3'
miRNA:   3'- -UCGCUUUG---CUUGUgCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 134844 0.67 0.806029
Target:  5'- cGGCGggGCGcgggGACgGCGCCC-GCGCg-- -3'
miRNA:   3'- -UCGCuuUGC----UUG-UGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 134549 0.67 0.806029
Target:  5'- uGCGGAGCGGcCGCGgagggccaggaCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCUuGUGC-----------GGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 134070 0.74 0.457981
Target:  5'- aGGCGGggagcAGCGAACA-GCCCgGCGCCg- -3'
miRNA:   3'- -UCGCU-----UUGCUUGUgCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 133853 0.67 0.832124
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 133548 0.7 0.689635
Target:  5'- uGCGccGCGcGCugGCCCgagcgGCGCgCUGg -3'
miRNA:   3'- uCGCuuUGCuUGugCGGGa----CGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 133197 0.68 0.769023
Target:  5'- cGGCGAgGACGAGCGCcggcgGCCCgaguggccgccGCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCUUGUG-----CGGGa----------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132703 0.71 0.627761
Target:  5'- cGGCGAGGCG-GCG-GCCCUGCcgGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUgCGGGACG--CGGac -5'
6357 3' -56.1 NC_001847.1 + 132571 0.67 0.806029
Target:  5'- cGGCGGccGCGcAgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCUu-UGCuUgUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132382 0.67 0.829586
Target:  5'- cGCGAagaaGACGAcgagGCGCccucgcucgcucccGCCCUGCGCUc- -3'
miRNA:   3'- uCGCU----UUGCU----UGUG--------------CGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 132081 0.73 0.476865
Target:  5'- uGCacuACGAGCACaaCCUGCGCCUGc -3'
miRNA:   3'- uCGcuuUGCUUGUGcgGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 131978 0.68 0.769023
Target:  5'- cGCGAGGCGcugGAgGCgGCCCgccGCGCCg- -3'
miRNA:   3'- uCGCUUUGC---UUgUG-CGGGa--CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131933 0.69 0.73894
Target:  5'- cGCGAGcggcugcGCGAGCugGCggaccgCUGCGCCg- -3'
miRNA:   3'- uCGCUU-------UGCUUGugCGg-----GACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131830 0.66 0.86428
Target:  5'- cGGCGGcAGCG---GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCU-UUGCuugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131558 0.71 0.628797
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 131418 0.67 0.840461
Target:  5'- cGCGAGGCGGccGCGCGCUacgcgGCgGCCg- -3'
miRNA:   3'- uCGCUUUGCU--UGUGCGGga---CG-CGGac -5'
6357 3' -56.1 NC_001847.1 + 131220 0.67 0.848604
Target:  5'- cGGCGccagcGCGGGCGCGCaaCCgGCGCCc- -3'
miRNA:   3'- -UCGCuu---UGCUUGUGCG--GGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131158 0.7 0.66911
Target:  5'- cGCGggGCc-GCGCGCCCgggcccccgGCGCCc- -3'
miRNA:   3'- uCGCuuUGcuUGUGCGGGa--------CGCGGac -5'
6357 3' -56.1 NC_001847.1 + 131128 0.73 0.496126
Target:  5'- cGCGAGagGCGGGCGCcggGCCCgGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCUUGUG---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 130739 0.67 0.823601
Target:  5'- cGCGGAggacGCGGACA-GCgCCUGgGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCG-GGACgCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.