Results 1 - 20 of 464 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 3' | -56.1 | NC_001847.1 | + | 606 | 0.65 | 0.890992 |
Target: 5'- uGCccGACG-ACGCGCCCcguguaccaccacaUGCGCCg- -3' miRNA: 3'- uCGcuUUGCuUGUGCGGG--------------ACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 130109 | 0.66 | 0.879101 |
Target: 5'- gGGCuGGGACGAGuacgagaGCGCCCUcGCGCg-- -3' miRNA: 3'- -UCG-CUUUGCUUg------UGCGGGA-CGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 127240 | 0.66 | 0.879101 |
Target: 5'- aAGCG--GCGGccgccGCGCGCCCcGCGCg-- -3' miRNA: 3'- -UCGCuuUGCU-----UGUGCGGGaCGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 85585 | 0.66 | 0.879101 |
Target: 5'- cGGCGccgucGACGGGCGCGCCggcaaagGCGCUa- -3' miRNA: 3'- -UCGCu----UUGCUUGUGCGGga-----CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 56490 | 0.66 | 0.879101 |
Target: 5'- cGGCGAcGCaGGCGCGCgCgaccGCGCCg- -3' miRNA: 3'- -UCGCUuUGcUUGUGCGgGa---CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 101457 | 0.66 | 0.879101 |
Target: 5'- cGCGccGCGA--GCG-CCUGCGCCUc -3' miRNA: 3'- uCGCuuUGCUugUGCgGGACGCGGAc -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 99753 | 0.66 | 0.879101 |
Target: 5'- cGGCaAAGCGAGCguggucaaaGCGCUccagCUGCGCCa- -3' miRNA: 3'- -UCGcUUUGCUUG---------UGCGG----GACGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 99203 | 0.66 | 0.879101 |
Target: 5'- cGCGAGGCGGccGCGCGgCggcGCGCCg- -3' miRNA: 3'- uCGCUUUGCU--UGUGCgGga-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 25991 | 0.66 | 0.879101 |
Target: 5'- gGGCGGgcgGGCGGGCGCGCag-GCGCg-- -3' miRNA: 3'- -UCGCU---UUGCUUGUGCGggaCGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 92689 | 0.66 | 0.881247 |
Target: 5'- cGCGGAacgcacccucugcccACGAGCGCGCgccaucgccgccaCCgGCGCCg- -3' miRNA: 3'- uCGCUU---------------UGCUUGUGCG-------------GGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 71168 | 0.66 | 0.885479 |
Target: 5'- gAGCGccGCGAACagggugucgcgcaGCGCCg-GCGCCg- -3' miRNA: 3'- -UCGCuuUGCUUG-------------UGCGGgaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 46806 | 0.66 | 0.886176 |
Target: 5'- cGGC-AGACGAGCACagGCCC-GCGCg-- -3' miRNA: 3'- -UCGcUUUGCUUGUG--CGGGaCGCGgac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 79968 | 0.66 | 0.886176 |
Target: 5'- uGGaaAAGCuccAGCGCGCCCcGCGUCUGg -3' miRNA: 3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 64230 | 0.66 | 0.886176 |
Target: 5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3' miRNA: 3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 119069 | 0.66 | 0.886176 |
Target: 5'- cAGCGuacUGGAgGCGCCCagcagagGCGCCg- -3' miRNA: 3'- -UCGCuuuGCUUgUGCGGGa------CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 117452 | 0.66 | 0.886176 |
Target: 5'- cGGCGugGCcGACaACGCCaCUggcggugcGCGCCUGg -3' miRNA: 3'- -UCGCuuUGcUUG-UGCGG-GA--------CGCGGAC- -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 100443 | 0.66 | 0.886176 |
Target: 5'- cAGCGcgGCGcGCAaGUCCUcGCGCCa- -3' miRNA: 3'- -UCGCuuUGCuUGUgCGGGA-CGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 93964 | 0.66 | 0.886176 |
Target: 5'- gGGCGcccucuuAACacGCGCGCCC-GCGCCg- -3' miRNA: 3'- -UCGCu------UUGcuUGUGCGGGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 85216 | 0.66 | 0.886176 |
Target: 5'- cGGCGuccAACGugcGCACGCgCaGCGCCa- -3' miRNA: 3'- -UCGCu--UUGCu--UGUGCGgGaCGCGGac -5' |
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6357 | 3' | -56.1 | NC_001847.1 | + | 62438 | 0.66 | 0.886176 |
Target: 5'- gAGCGuguuuuCGucgGCGCgGCUCUGCGCCg- -3' miRNA: 3'- -UCGCuuu---GCu--UGUG-CGGGACGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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