miRNA display CGI


Results 1 - 20 of 464 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 3' -56.1 NC_001847.1 + 124121 1.09 0.002326
Target:  5'- cAGCGAAACGAACACGCCCUGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCGGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 6903 0.85 0.09116
Target:  5'- cGGCGAGcGCGcGCGCGCCCUGCGCgCUGu -3'
miRNA:   3'- -UCGCUU-UGCuUGUGCGGGACGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 22114 0.85 0.093637
Target:  5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 124927 0.85 0.093637
Target:  5'- gGGCGAcAGCGGGCGCGCCCUGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGGGACgCGGac -5'
6357 3' -56.1 NC_001847.1 + 77986 0.83 0.125399
Target:  5'- uGGCGGgcGGCGAGCGCGCCCUGCuGUUUGa -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCGGGACG-CGGAC- -5'
6357 3' -56.1 NC_001847.1 + 12038 0.82 0.142928
Target:  5'- cGGCGGAGCGcuGgACGCCCUGCGCgCUGc -3'
miRNA:   3'- -UCGCUUUGCu-UgUGCGGGACGCG-GAC- -5'
6357 3' -56.1 NC_001847.1 + 42135 0.8 0.194422
Target:  5'- cGCGuuGGCGAgaGCugGCCCgGCGCCUGg -3'
miRNA:   3'- uCGCu-UUGCU--UGugCGGGaCGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 58793 0.8 0.199378
Target:  5'- cGGCaGGAACGGACAgCGCCUgcgccgGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCUUGU-GCGGGa-----CGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 94252 0.78 0.267799
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
6357 3' -56.1 NC_001847.1 + 30141 0.78 0.274284
Target:  5'- cGCGAcGCGcGGCGCGCCgUGCGcCCUGg -3'
miRNA:   3'- uCGCUuUGC-UUGUGCGGgACGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 35918 0.77 0.287631
Target:  5'- gAGCGGcauggaccGGCGGucGCGCGCgCUUGCGCCUGg -3'
miRNA:   3'- -UCGCU--------UUGCU--UGUGCG-GGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 127415 0.77 0.287631
Target:  5'- cGCcuccGCGccCGCGCCCUGCGCCUGa -3'
miRNA:   3'- uCGcuu-UGCuuGUGCGGGACGCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 100955 0.77 0.294494
Target:  5'- gGGCGGGACGuGCGCGCCCccggcccgcaGCGCCUc -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa---------CGCGGAc -5'
6357 3' -56.1 NC_001847.1 + 61274 0.77 0.308601
Target:  5'- cGGCGGAACuGACGCGCCCcGCGCa-- -3'
miRNA:   3'- -UCGCUUUGcUUGUGCGGGaCGCGgac -5'
6357 3' -56.1 NC_001847.1 + 95920 0.77 0.323217
Target:  5'- uGGUGGAACGAGCucugaGCCCgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUUGug---CGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 122820 0.76 0.338344
Target:  5'- cAGCGAGccgGCGGGCGCGCCCaccgggcccGCGcCCUGg -3'
miRNA:   3'- -UCGCUU---UGCUUGUGCGGGa--------CGC-GGAC- -5'
6357 3' -56.1 NC_001847.1 + 64023 0.76 0.338344
Target:  5'- cGGCGGGACGGGCuuGCCCgcgguucaCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGugCGGGac------GCGGAC- -5'
6357 3' -56.1 NC_001847.1 + 61330 0.76 0.346098
Target:  5'- gGGCGggGCGGGCGCGCCUaGC-CCa- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGGGaCGcGGac -5'
6357 3' -56.1 NC_001847.1 + 79994 0.76 0.353979
Target:  5'- uGCGcgGCGGugACGCCCcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUugUGCGGGaCGCGGac -5'
6357 3' -56.1 NC_001847.1 + 81863 0.76 0.361985
Target:  5'- cGUGAGGCGGACGCGCgCCUGgGCg-- -3'
miRNA:   3'- uCGCUUUGCUUGUGCG-GGACgCGgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.