miRNA display CGI


Results 81 - 100 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 48131 0.66 0.819754
Target:  5'- cGCgAGGCGCggccCAGGuaaccgccGGGCcggCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCG----GUUC--------UCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 102496 0.66 0.819754
Target:  5'- gGCagaAGGCGUgCAGGcaGGGCagagCGCGCGCc -3'
miRNA:   3'- aCG---UCCGCG-GUUC--UCUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 60988 0.66 0.819754
Target:  5'- cGCGcccacGGCGCCGucGAGGCcgccaucggCGCcGCGCg -3'
miRNA:   3'- aCGU-----CCGCGGUu-CUCUGaa-------GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 89880 0.66 0.81889
Target:  5'- gGCuuuugGGGCGCCuucGGGGACgcggCGCccgagguugugccGCGCg -3'
miRNA:   3'- aCG-----UCCGCGGu--UCUCUGaa--GCG-------------CGCG- -5'
6357 5' -57.2 NC_001847.1 + 94052 0.66 0.81889
Target:  5'- gUGCAGGCGCagcuGGGCcggcaccaguacgUUUGCGCGg -3'
miRNA:   3'- -ACGUCCGCGguucUCUG-------------AAGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 75998 0.66 0.81889
Target:  5'- aGC-GGCGCCGGuacaacuGGGACcaccCGCGCGg -3'
miRNA:   3'- aCGuCCGCGGUU-------CUCUGaa--GCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 66347 0.66 0.81889
Target:  5'- cGCGGGCGCCGccGuGGCgaUCGUccccgugGCGCc -3'
miRNA:   3'- aCGUCCGCGGUu-CuCUGa-AGCG-------CGCG- -5'
6357 5' -57.2 NC_001847.1 + 66490 0.66 0.817156
Target:  5'- cGCAGGgGCgGGGAGgcggugaaguuuggGCUggaGCuGCGCg -3'
miRNA:   3'- aCGUCCgCGgUUCUC--------------UGAag-CG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 62167 0.66 0.814542
Target:  5'- cGUAGGCcgccguguagcccacGCCGAG-GuCcaCGCGCGCg -3'
miRNA:   3'- aCGUCCG---------------CGGUUCuCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 116926 0.66 0.811913
Target:  5'- cGCAcgacCGCCGAGAGACcgccagcccgagaccUCGCcGCGCg -3'
miRNA:   3'- aCGUcc--GCGGUUCUCUGa--------------AGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 3942 0.66 0.811033
Target:  5'- aGCGGGCGgCGAGcgcGACccacagCGCcaGCGCg -3'
miRNA:   3'- aCGUCCGCgGUUCu--CUGaa----GCG--CGCG- -5'
6357 5' -57.2 NC_001847.1 + 19657 0.66 0.811033
Target:  5'- uUGCGGGCccgGCCGccGGAaACUgcgaccgggUGCGCGCc -3'
miRNA:   3'- -ACGUCCG---CGGU--UCUcUGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3803 0.66 0.811033
Target:  5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 125486 0.66 0.811033
Target:  5'- gGCGGGCGCgAGGAcgcccGGCUgcUCGaGCGg -3'
miRNA:   3'- aCGUCCGCGgUUCU-----CUGA--AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 72901 0.66 0.811033
Target:  5'- cUGCAGguggcGCGCCAcGAGGCggUCG-GCGg -3'
miRNA:   3'- -ACGUC-----CGCGGUuCUCUGa-AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 103732 0.66 0.811033
Target:  5'- cGC-GGCuGCC-AGAcGGCguccacgaaUUCGCGCGCu -3'
miRNA:   3'- aCGuCCG-CGGuUCU-CUG---------AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 99151 0.66 0.811033
Target:  5'- cGCGGcCGCCugcAGcgcGGCUgCGCGCGCc -3'
miRNA:   3'- aCGUCcGCGGu--UCu--CUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51657 0.66 0.811033
Target:  5'- cGC-GGCGCugcgcccgcaaCAGGGcGGCguaCGCGCGCg -3'
miRNA:   3'- aCGuCCGCG-----------GUUCU-CUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 27681 0.66 0.811033
Target:  5'- cGCGGcGCGUC---GGGCUgagGCGCGCg -3'
miRNA:   3'- aCGUC-CGCGGuucUCUGAag-CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 86358 0.66 0.811033
Target:  5'- gGCgAGGCGCCcgcagacGAGGCggCGgGcCGCg -3'
miRNA:   3'- aCG-UCCGCGGuu-----CUCUGaaGCgC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.