miRNA display CGI


Results 61 - 80 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 64825 0.66 0.828303
Target:  5'- cGCaccGGGCGCUucagcuccGAGACcagCGCgGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuu------CUCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 96337 0.66 0.828303
Target:  5'- gGUGGGCGgCGGGcuGGCgugCGaCGCGCu -3'
miRNA:   3'- aCGUCCGCgGUUCu-CUGaa-GC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 89770 0.66 0.828303
Target:  5'- gUGCAcGCGCCGGcguacGAGGCcgucaUCGCGCugGCg -3'
miRNA:   3'- -ACGUcCGCGGUU-----CUCUGa----AGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 117893 0.66 0.828303
Target:  5'- cGCAacGGCuacCCcguGGAGGCUcggcaCGCGCGCg -3'
miRNA:   3'- aCGU--CCGc--GGu--UCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 54977 0.66 0.828303
Target:  5'- gGCAGcGCGCaCA----ACUUCGCGCaGCc -3'
miRNA:   3'- aCGUC-CGCG-GUucucUGAAGCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 134121 0.66 0.824905
Target:  5'- cUGCGGcGCGCCGcgGGcGGCggccugguggagCGCGUGCc -3'
miRNA:   3'- -ACGUC-CGCGGU--UCuCUGaa----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31308 0.66 0.824905
Target:  5'- cUGCGGcGCGCCGcgGGcGGCggccugguggagCGCGUGCc -3'
miRNA:   3'- -ACGUC-CGCGGU--UCuCUGaa----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 28923 0.66 0.823195
Target:  5'- gUGCAGGCgagcGCCAcgccgaccaagccguGGAGACgcuggcCGCG-GCg -3'
miRNA:   3'- -ACGUCCG----CGGU---------------UCUCUGaa----GCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 99578 0.66 0.819754
Target:  5'- aGCccGGCGCCcucGucGCggUCGCGCGCc -3'
miRNA:   3'- aCGu-CCGCGGuu-CucUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 48843 0.66 0.819754
Target:  5'- cGgGGGCGCCuc--GGCcgCGCgGCGCg -3'
miRNA:   3'- aCgUCCGCGGuucuCUGaaGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 80870 0.66 0.819754
Target:  5'- cGCGGaugaGCGCCucGAGccGCUcgUCGgGCGCc -3'
miRNA:   3'- aCGUC----CGCGGuuCUC--UGA--AGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 14436 0.66 0.819754
Target:  5'- cGCuguuuGGCGCCGAGcGcgcggccgcgcuGCUcggCGUGCGCu -3'
miRNA:   3'- aCGu----CCGCGGUUCuC------------UGAa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 74140 0.66 0.819754
Target:  5'- cGCGuGGCGCCGGGGcgaauGAUggCG-GCGCc -3'
miRNA:   3'- aCGU-CCGCGGUUCU-----CUGaaGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 48131 0.66 0.819754
Target:  5'- cGCgAGGCGCggccCAGGuaaccgccGGGCcggCGCGCGCc -3'
miRNA:   3'- aCG-UCCGCG----GUUC--------UCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 1492 0.66 0.819754
Target:  5'- aGCGgcGGCGCCucGGGGuagagcCGCGCGUa -3'
miRNA:   3'- aCGU--CCGCGGu-UCUCugaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 104305 0.66 0.819754
Target:  5'- aGCGgcGGCGCCucGGGGuagagcCGCGCGUa -3'
miRNA:   3'- aCGU--CCGCGGu-UCUCugaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 2352 0.66 0.819754
Target:  5'- uUGCAcGG-GCCGcauGAGGuCcagUCGCGCGCc -3'
miRNA:   3'- -ACGU-CCgCGGUu--CUCU-Ga--AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 118659 0.66 0.819754
Target:  5'- cGCGGGagGCgCAAGAGAggugUC-CGCGCu -3'
miRNA:   3'- aCGUCCg-CG-GUUCUCUga--AGcGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 66304 0.66 0.819754
Target:  5'- cGCucGCGCCc-GAGcuCUUCGCgGCGCc -3'
miRNA:   3'- aCGucCGCGGuuCUCu-GAAGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 3708 0.66 0.819754
Target:  5'- gGUAGGCGC-----GGCaaUCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGguucuCUGa-AGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.