miRNA display CGI


Results 61 - 80 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 58206 0.66 0.834181
Target:  5'- aGCAGGCGCUccGGGcggaucugcccgccGGGCggcagcggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG--UUC--------------UCUGaa------GC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 117893 0.66 0.828303
Target:  5'- cGCAacGGCuacCCcguGGAGGCUcggcaCGCGCGCg -3'
miRNA:   3'- aCGU--CCGc--GGu--UCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 118659 0.66 0.819754
Target:  5'- cGCGGGagGCgCAAGAGAggugUC-CGCGCu -3'
miRNA:   3'- aCGUCCg-CG-GUUCUCUga--AGcGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 100869 0.66 0.819754
Target:  5'- aGCGcGGCGCCcAGccGC--CGCGCGCc -3'
miRNA:   3'- aCGU-CCGCGGuUCucUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 1492 0.66 0.819754
Target:  5'- aGCGgcGGCGCCucGGGGuagagcCGCGCGUa -3'
miRNA:   3'- aCGU--CCGCGGu-UCUCugaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 75998 0.66 0.81889
Target:  5'- aGC-GGCGCCGGuacaacuGGGACcaccCGCGCGg -3'
miRNA:   3'- aCGuCCGCGGUU-------CUCUGaa--GCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 66490 0.66 0.817156
Target:  5'- cGCAGGgGCgGGGAGgcggugaaguuuggGCUggaGCuGCGCg -3'
miRNA:   3'- aCGUCCgCGgUUCUC--------------UGAag-CG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 62167 0.66 0.814542
Target:  5'- cGUAGGCcgccguguagcccacGCCGAG-GuCcaCGCGCGCg -3'
miRNA:   3'- aCGUCCG---------------CGGUUCuCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 116926 0.66 0.811913
Target:  5'- cGCAcgacCGCCGAGAGACcgccagcccgagaccUCGCcGCGCg -3'
miRNA:   3'- aCGUcc--GCGGUUCUCUGa--------------AGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 103732 0.66 0.811033
Target:  5'- cGC-GGCuGCC-AGAcGGCguccacgaaUUCGCGCGCu -3'
miRNA:   3'- aCGuCCG-CGGuUCU-CUG---------AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 80870 0.66 0.819754
Target:  5'- cGCGGaugaGCGCCucGAGccGCUcgUCGgGCGCc -3'
miRNA:   3'- aCGUC----CGCGGuuCUC--UGA--AGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 99578 0.66 0.819754
Target:  5'- aGCccGGCGCCcucGucGCggUCGCGCGCc -3'
miRNA:   3'- aCGu-CCGCGGuu-CucUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64825 0.66 0.828303
Target:  5'- cGCaccGGGCGCUucagcuccGAGACcagCGCgGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuu------CUCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 28521 0.66 0.828303
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 81858 0.66 0.828303
Target:  5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 69896 0.66 0.828303
Target:  5'- cGCGGGC-CCGGGuGGCggaaaaGCGcCGCc -3'
miRNA:   3'- aCGUCCGcGGUUCuCUGaag---CGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 68741 0.66 0.828303
Target:  5'- aGCccGCGCCGc-GGAUgugCGCGCGUg -3'
miRNA:   3'- aCGucCGCGGUucUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52399 0.66 0.828303
Target:  5'- gGCAaGCGCUccAGcgcGGGCggCGCGCGCu -3'
miRNA:   3'- aCGUcCGCGGu-UC---UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33656 0.66 0.828303
Target:  5'- aGCcGGCGCCucGGucGCUa-GCGCGCc -3'
miRNA:   3'- aCGuCCGCGGu-UCucUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31308 0.66 0.824905
Target:  5'- cUGCGGcGCGCCGcgGGcGGCggccugguggagCGCGUGCc -3'
miRNA:   3'- -ACGUC-CGCGGU--UCuCUGaa----------GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.