miRNA display CGI


Results 61 - 80 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 15526 0.68 0.716269
Target:  5'- gGCGGGaGCCGcGGGcuGCUggcgccggugCGCGCGCg -3'
miRNA:   3'- aCGUCCgCGGUuCUC--UGAa---------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 15574 0.69 0.685999
Target:  5'- cGCGGcCGCCGcugcccgcAGAGuCUggcCGCGCGCc -3'
miRNA:   3'- aCGUCcGCGGU--------UCUCuGAa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 16075 0.71 0.553051
Target:  5'- cUGCuGGGCGCCuccAGuacGCUgauUCGCGCGCc -3'
miRNA:   3'- -ACG-UCCGCGGu--UCuc-UGA---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 16985 0.7 0.573283
Target:  5'- cGCAGggagacGCGCCccucGGGGACgcaGCGCGCc -3'
miRNA:   3'- aCGUC------CGCGGu---UCUCUGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 17118 0.71 0.543015
Target:  5'- cGCucuGGaaCCAGGAGACgUCGCaGCGCa -3'
miRNA:   3'- aCGu--CCgcGGUUCUCUGaAGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 17281 0.69 0.665579
Target:  5'- gUGCAGGCGCguGGAGcGCg--GCGgGUa -3'
miRNA:   3'- -ACGUCCGCGguUCUC-UGaagCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 18242 0.66 0.844853
Target:  5'- cGCGGGUGgauCCAAGAuGGCcgcgacCGCgGCGCg -3'
miRNA:   3'- aCGUCCGC---GGUUCU-CUGaa----GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 18403 0.77 0.261123
Target:  5'- cUGCGGGC-CCGcGGGGCUgucgaacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUuCUCUGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 18805 0.67 0.765142
Target:  5'- gGCGGcgcGCGCCAgcgcgcgcauGGGcacGGCguccUCGCGCGCg -3'
miRNA:   3'- aCGUC---CGCGGU----------UCU---CUGa---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19008 0.69 0.645048
Target:  5'- gGC-GGCGCCcucGGccuCUUCGCGCGUg -3'
miRNA:   3'- aCGuCCGCGGuucUCu--GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19086 0.68 0.743936
Target:  5'- gUGCGccccGGUGCCc-GAGGCUgccgucacaaagUGCGCGCa -3'
miRNA:   3'- -ACGU----CCGCGGuuCUCUGAa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19338 0.7 0.624477
Target:  5'- cGCAaGCGCCGcggccGGGuCUUgCGCGCGCc -3'
miRNA:   3'- aCGUcCGCGGUu----CUCuGAA-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19427 0.7 0.624477
Target:  5'- aGCGGgaGCGCCAA-AGGC--CGCGCGCc -3'
miRNA:   3'- aCGUC--CGCGGUUcUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19657 0.66 0.811033
Target:  5'- uUGCGGGCccgGCCGccGGAaACUgcgaccgggUGCGCGCc -3'
miRNA:   3'- -ACGUCCG---CGGU--UCUcUGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 19893 0.68 0.744911
Target:  5'- gGCGGGCGCgAGGuagaagcgcacgaGGGCgUCGC-CGCc -3'
miRNA:   3'- aCGUCCGCGgUUC-------------UCUGaAGCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 20643 0.69 0.665579
Target:  5'- aGCgAGGCGCCaAAGGGGCUcaGCaGgGCg -3'
miRNA:   3'- aCG-UCCGCGG-UUCUCUGAagCG-CgCG- -5'
6357 5' -57.2 NC_001847.1 + 20807 0.67 0.796742
Target:  5'- gGCGGGUGCUucGGcGGCgcuuucgcucgccucUUaCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuuCU-CUG---------------AA-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 20974 0.67 0.78392
Target:  5'- aGCGaGCGCCcAGuGAg--CGCGCGCc -3'
miRNA:   3'- aCGUcCGCGGuUCuCUgaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 20976 0.69 0.669674
Target:  5'- aGCGGGCGCgcgcacuaggccuccCAAucGGCacCGCGCGCg -3'
miRNA:   3'- aCGUCCGCG---------------GUUcuCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 21184 0.68 0.714269
Target:  5'- cUGCGGcgacGCGCCcggcggcguAGGAGACgccgccgcgacCGCGCGCu -3'
miRNA:   3'- -ACGUC----CGCGG---------UUCUCUGaa---------GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.