miRNA display CGI


Results 61 - 80 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 55685 0.73 0.419826
Target:  5'- cGCAGGCgGCCGGG-GAaaacucgcgcuuCUUCGUGUGCc -3'
miRNA:   3'- aCGUCCG-CGGUUCuCU------------GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34833 0.73 0.428715
Target:  5'- -cCGGGCGCU-GGAGGCga-GCGCGCa -3'
miRNA:   3'- acGUCCGCGGuUCUCUGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33841 0.79 0.189732
Target:  5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 103110 0.79 0.196509
Target:  5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3'
miRNA:   3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5'
6357 5' -57.2 NC_001847.1 + 124913 0.77 0.254932
Target:  5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34655 0.76 0.300863
Target:  5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 12432 0.75 0.322421
Target:  5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33562 0.75 0.352926
Target:  5'- gGCAGaCGCCGcGGAGGCggcCGUGCGCg -3'
miRNA:   3'- aCGUCcGCGGU-UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 106786 0.74 0.368927
Target:  5'- cGCgaGGGCGCCGGGGGcCcggGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 22195 0.74 0.393844
Target:  5'- cGCGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCGUCCGCGGuuCuc--UGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 1920 0.71 0.553051
Target:  5'- gGCAGGUGgC--GAGGCUUagccgGCGCGCg -3'
miRNA:   3'- aCGUCCGCgGuuCUCUGAAg----CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 74342 0.71 0.543015
Target:  5'- cGCAGGCGCgCGcgcuGGuGGCgcgcguggUgGCGCGCg -3'
miRNA:   3'- aCGUCCGCG-GU----UCuCUGa-------AgCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59499 0.73 0.455104
Target:  5'- gGCAGgggguGCGCCGAGGccgcaccGGCUUgGUGCGCu -3'
miRNA:   3'- aCGUC-----CGCGGUUCU-------CUGAAgCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 85788 0.73 0.45603
Target:  5'- aUGCGGugcGCGUCGAGGGuGCgggCGCGUGCa -3'
miRNA:   3'- -ACGUC---CGCGGUUCUC-UGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 5730 0.72 0.493849
Target:  5'- gGCGGGCGUCGcaucaGGGGACgcaccgccgUCcgGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGU-----UCUCUGa--------AG--CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 116696 0.72 0.497711
Target:  5'- cGCGGGCGUCGucgcguacGAGAUgcuggcauacccgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCGGUu-------CUCUGaa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 53373 0.72 0.507424
Target:  5'- cGCGGGCaccgcgagcgcgccuGCCGAGuu-UUUUGCGCGCa -3'
miRNA:   3'- aCGUCCG---------------CGGUUCucuGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 29019 0.72 0.513291
Target:  5'- cGCAGcuaucGCGCCcAGAG-CcgCGCGCGCc -3'
miRNA:   3'- aCGUC-----CGCGGuUCUCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 56813 0.71 0.523129
Target:  5'- cGC-GGCGcCCAAGccGGGCccgcggCGCGCGCg -3'
miRNA:   3'- aCGuCCGC-GGUUC--UCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 125392 0.71 0.529066
Target:  5'- aGCGGGCGCCccGGGGCagggcccgcccggUCGCGUGg -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGa------------AGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.