miRNA display CGI


Results 61 - 80 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 40922 0.74 0.377112
Target:  5'- cGCGGGCGCCccgccgcGAG-CUccgcCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGuu-----CUCuGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 35470 0.74 0.392149
Target:  5'- cGCgagAGGCGCU-AGAGGCggcaaaggcggCGCGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuUCUCUGaa---------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101864 0.74 0.393844
Target:  5'- aGCAGGuCGCgGAgGAGcucgcCUUUGCGCGCg -3'
miRNA:   3'- aCGUCC-GCGgUU-CUCu----GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 36988 0.74 0.393844
Target:  5'- aGCGGGCccgcGCCGAGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUCCG----CGGUUCuCUGaaGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 105738 0.74 0.393844
Target:  5'- cGCAGGUcaaaccagGUUAGGAgGGCcUCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUUCU-CUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 61448 0.74 0.393844
Target:  5'- cGcCGGGCGCgGcGAGGCggUCGCGCaGCa -3'
miRNA:   3'- aC-GUCCGCGgUuCUCUGa-AGCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 22195 0.74 0.393844
Target:  5'- cGCGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCGUCCGCGGuuCuc--UGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 57997 0.74 0.393844
Target:  5'- cGguGGCgGCgCAGGcGGCggcggUCGCGCGCg -3'
miRNA:   3'- aCguCCG-CG-GUUCuCUGa----AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 38568 0.74 0.402388
Target:  5'- cGcCGGGCGcCCAGGcacacggccagcAGACcgCGCGCGCg -3'
miRNA:   3'- aC-GUCCGC-GGUUC------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 68982 0.73 0.41105
Target:  5'- cGCGGGCacgGCCGAGAGcACguccagcaCGUGCGCc -3'
miRNA:   3'- aCGUCCG---CGGUUCUC-UGaa------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 87358 0.73 0.41105
Target:  5'- cGCGGGCGCCGAG-GcCgaCGCGUGg -3'
miRNA:   3'- aCGUCCGCGGUUCuCuGaaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 3677 0.73 0.41105
Target:  5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3'
miRNA:   3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 94731 0.73 0.41105
Target:  5'- gGCAGGCaCCAcucGGGCUUUGgGCGCg -3'
miRNA:   3'- aCGUCCGcGGUuc-UCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 102221 0.73 0.418943
Target:  5'- cGCGGGuCGUCGGGcgggacggcguccAGGCgcUCGCGCGCg -3'
miRNA:   3'- aCGUCC-GCGGUUC-------------UCUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 55685 0.73 0.419826
Target:  5'- cGCAGGCgGCCGGG-GAaaacucgcgcuuCUUCGUGUGCc -3'
miRNA:   3'- aCGUCCG-CGGUUCuCU------------GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101082 0.73 0.419826
Target:  5'- cGCGGGgGCCGGGucggcgGGGCgggCGgGCGCg -3'
miRNA:   3'- aCGUCCgCGGUUC------UCUGaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 55451 0.73 0.419826
Target:  5'- cGCcuGGCGCCGGcGGGGCgcgCGCcGCGCu -3'
miRNA:   3'- aCGu-CCGCGGUU-CUCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 60299 0.73 0.419826
Target:  5'- aGCgGGGCGgCGGGcGGCagCGCGCGCg -3'
miRNA:   3'- aCG-UCCGCgGUUCuCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 68832 0.73 0.428715
Target:  5'- cGCAgGGCGCCGcgaAGAG-C-UCGgGCGCg -3'
miRNA:   3'- aCGU-CCGCGGU---UCUCuGaAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 66202 0.73 0.428715
Target:  5'- cGCAucGGCGCCGcccagcGGcGGCUcgggCGCGCGCa -3'
miRNA:   3'- aCGU--CCGCGGU------UCuCUGAa---GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.